Chr:
Chr8
Start:
27515097
End:
27516150
Strand:
-
Ref_name:
LOC112936227
Sequence
(XR_003238352.1):
UCCUUCCUCCAUACGCUUCCAUCCAAUCGGAUUUCAGCAACUCCACUCUACUCCGUCGCCGCCUUCUCGCGACGCCUCCUCCUCUACUCCGGCGACGGCGAGGCGGCAAUGCAUCCGCCUCCUCCGACGCCGCGUUCCUCGUUGGUUUUACAGGUUCAGGUUGGUGAAUGGGGAAUUCGCACAGCUGUAGUGUUGUUGCUUGAGCACUUCUCAGAAAAAGCAUCCCAACAAAGCUUCGAGCCGAUUACAAGACAGUGGGCACCAAGGUUGCCUAUUGCUUUAUGAUCAGCAAUGCAGAGAAUGUGCUCAAGCUAAGAUGAACUUUCUGAACCUUGCAGAAGAGAAUGCUGGACGAACCAUUGAUCAGUCCAUAAUUACCCAUGAAUGCUAUAGGCAGAGCAAAGUAACUCGUGUUGGUGCUGUGUCAAUGGUCUGUCUGGUAAGUUGCCUAUCACACAAAUUGAUUCUCAUUUAUCAACAAUGCAAAUUCUACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.28%
ME_num:
MEP:
7.11%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.93
Avg Expression:
0.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.88433970911066 | 0.00149467603870473 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.03989394238575 | 0.00488642190045058 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.26374200719689 | 7.61938564737318e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.85582486785946 | 0.0255300944347749 |