Chr:
Chr8
Start:
15933916
End:
15935869
Strand:
-
Ref_name:
LOC112936179
Sequence
(XR_003238327.1):
CUCAAAAAGGCAAUAUAGAUAGCCAAGCUUACAAAAGCUCCAGAACAACAAAUUCGAUCACUUGAAGCUUUCUCAACGAGAUCCUUGCCAAGAAUGUCCAGUUCUAAGGGACUUAGUAGCUCUGUGCCUCCCCAAGGUGGCUCUGGAGCAUCCAAAAGGCACGCGGACACUCGUCAUGAAGUGACAAACCUUACAGGUAAAUGUUUUUUUUCUUCCAAAUUUUGUUCAAUCCAACCAUCCACAAUGCAGAACUUAUGUAUAAUAUGUUCCAAAAGGAUGUAUAAUAUCAACUGUAUCCAUCUAUCCCAAUUGUCUCUUGUAAAAAUACUGUAAAAUGAAACAUAAUUAAUUUACUACAUGAUUCAUUUUGAUUUCUACCUUUUGUUGGAGGUCGUCAGUGUCGUAGGCGGCAGCUUUGCAGGUUCUGAAGAUGCCGCUCGUUGCCGAAUGAUGAACAGCAGCUUCAGCUUGAUCAAGGCACGCCGGCGGCGCUGUCUUCAAGGAGAUUCACGCCCUCGCCGAGGUGCACGAGACGGACGGCGGCUCUCCUCCAAGAUACAAUGAUCUCGUAUCCUCAGCCGUGCACUCGGCCAAGAACGAACCAGCGGACUUUCGUGGGAUGUAACUCUCUCUAUGCAAAACAAGCAGAUGGAUGUGGGCAAAAACUUCGUGCAACAAAUACAGCAGCAGUACGUGACUUAUAUAGCCUUGUAUAGCAACAAGAAAAUCUUAUCUCUAAGCCGGAUAACAAACAAUCAACAGAUUGAUUUUCGUCGGCCUGAA
Sequence
(XR_003238328.1):
CUCAAAAAGGCAAUAUAGAUAGCCAAGCUUACAAAAGCUCCAGAACAACAAAUUCGAUCACUUGAAGCUUUCUCAACGAGAUCCUUGCCAAGAAUGUCCAGUUCUAAGGGACUUAGUAGCUCUGUGCCUCCCCAAGGUGGCUCUGGAGCAUCCAAAAGGCACGCGGACACUCGUCAUGAAGUGACAAACCUUACAGGUAAAUGUUUUUUUUCUUCCAAAUUUUGUUCAAUCCAACCAUCCACAAUGCAGAACUUAUGUAUAAUAUGUUCCAAAAGGAUGUAUAAUAUCAACUGUAUCCAUCUAUCCCAAUUGUCUCUUGUAAAAAUACUGUAAAAUGAAACAUAAUUAAUUUACUACAUGAUUCAUUUUGAUUUCUACCUUUUGUUGGAGGUCGUCAGUGUCGUAGGCGGCAGCUUUGCAGGUUCUGAAGAUGCCGCUCGUUGCCGAAUGAUGAACAGCAGCUUCAGCUUGAUCAAGGCACGCCGGCGGCGCUGUCUUCAAGGAGAUUCACGCCCUCGCCGAGGUGCACGAGACGGACGGCGGCUCUCCUCCAAGAUACAAUGAUCUCGUAUCCUCAGCCGUGCACUCGGCCAAGAACGAACCAGCGGACUUUCGUGGGAUGUAACUCUCUCUAUGCAAAACAAGCAGAUGGAUGUGGGCAAAAACUUCGUGCAACAAAUACAGCAGCAGUGCCUUCCAGACUUGAACCUUAUGUCUAGCUAGUACAUGACUUAAUUUACACAGGAGCGCAGUGGAGGUAACCUUGAACUUUACUCCUUGGUGUGUAAACAUCAUCAAGUAGGUGCACAAUACACGGCUACAGCCACAAGAGCCCUUUCAGUUUUGUGCUUUUCGGUCAUACACAAGUAUCUUGGAUCUCAUGAGUGCUUUAGGAAGCGGCCAGCUAAACUUCCAUGGAUUGCGACCAAACAAUCACGCUCAAGUAGGUGGAUUCUCUAAGGAUAUCCUGCAAGGCACAUAUCCCAUCACUUAGAUUUGAAUCCAUUAAGAGACACAGCUCAACCUCUUCCUUGCAAAUUAGAAGUACUGAAUCAAUAGCAAGGGGUAUAAUGUAAUUUAAUCAGUACUCACCAUUACAGAUCAGCUUGUUUUCCCAUUGAACCUGUGUCAUGGGAUUUCCAAUCAAACAGGUUGGGUUGCCACUGUCAAUAAUUCAUUAGCAGGCCUCAGCCCCAUCCCUUUCGACAACUCUAAUAUUGGCUUUCGUGCUAAUCCUUUUGUGAAUGGAUCAGCCAAAUUCUUUUCUGUCUUGAUAUAGUCAAAUGUAACUACACCAGUAUUCCUCAAGUCUCUAACAGACUUUAGUCUCCUCUUCAUAUGUCUAGAAGAUUUCAUGUUUUCUUUCUUGCUUGUAACUUUAGCUAUCACAGCUUGAUUGUCACAAUACAAGAGCACUACAGGAAUUGGUUUUUCUACUAUUGGAAUAUCCAUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
89.84%
ME_num:
MEP:
9.15%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
1.15
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.32887328560849 | 0.014183090994598 |
| 2 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 3.66578599919982 | 6.70199756399027e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 6.63819369626014 | 1.07048211707586e-07 |
| 4 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 3.85949304423402 | 0.0387411507566309 |
| 5 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 3.42713399790293 | 0.0234469155858468 |