Chr:
Chr1
Start:
163111
End:
169478
Strand:
+
Ref_name:
LOC112936174
Sequence
(XR_003238324.1):
CUAAAUUAGAAAAUAAAAACUAAAAAAAAUAAAGGGUAAAUGGGUGGUGGGCCGAAAUCAAUAGGAUUCGGCCCACCACCGCUAUUGUGCGGCCGGCCCAUCGGCCCGAGGGGAAAAGGGCGCAGGGGGCGAGGGGGUGUUACGGUUAGAACCCUAACCGUUCCCCUCGCGGUGUGCGCCGCCGCCGCCACCGAUUGGCCGCGCGUCCUCCACCUCUUCUGCCGCCGCCGCCAUUUCGCCGCCUCCUCCUCCACCACUUUGGCCGCCGUUUCCACCGCCGCCUUUCUCAUCCACCGCCGAUCCCAUUUCCGCCGCCACCUUCUCCCCCUGAAACGCCGCCACCGCUGCCUCCAUUUCCGCCGCCGCCCACCACCGCCUGCAUCCACCGCCGUCUCUACCGCCCGCCGCCGCCAUCCACCGUCCGCCGCCGCCGCAUCCCCCAUGUCGGCCGGCGGUUUGCCGGCUAGAGUUAGGCCGACGGCCCCAACUCCUCAUCGGAGUCGGAGACCGGUCGAGCCCUUACACCGUUCCCCAUCCCGCCAUUUGAGAGCGUGCGGGAGCCAUGGGGAACGGCGAGCCAUGUGGAGCGGAGGCCGGGACGGCGAGCAGUGGCUUCACCGGCAUGACGGCGAGACGACGAUGGGUUGAAGUAGGCCGGCUCCCCCGUGCGCGCUGCCAUGGUUUCGUUCCGGCCGGACUCCGGUGCCACGGGAGUGGGGGAGCGGCGUUGGCGUGGCGUCGGCGACGUCGUGGCGCGGGUGAUGGCGGGGUUGGAGUAGCAGCAAUGGUGAUGCGGCGCCGAGGGUUGUGGCGGCGGCCACUAACCCUAGGCCCGCGCCUGGCAUGGUGAUGGUGGCAGUGGUGGCGACUCCUCGUUGUACGAUGGAGGAGGUGGUGCAGAUGGCGGGCUCGGUCAUGGCGAGGAAUACCAAGAACGGCGUCGAUCGGCCAAGAACGGCGUCGAUAAGUAACUGAAGGUAUCGACAUAUAUUGUGCUCCGGCCCGUUGCUGAUUGAUUCCAGGUAAGUUUGGCAAAGCGUCCAUGACUCAUAUUGUCAUAUUGCCUCCAUGACAACAAGCGAGGGGAAAUGCUUUAGGUGAAUAACCGGAGGAAGUAUCCGGAUGAUGUAUUUGCUCCUGGUCUAGGUGAAUAGCCUUCUCUGGACACUGUUGUCUGCCCUGGAGGUAGUUUUGAUAACAUUGACAGGUAUCUGGAUUGGCAGGUCCCAAGUACGACGGAGAGGCCGGCGCAGAUUAGAGCUGAUCUAUAGGUAAUCACAUAUGUCCAUAAUAUAUGUUUUUUUUAAUAUAAAUGUUUCCGCACAACAAAUUUGUUUCAGUGCUCCCUCAGUUUUCUGGCGCCAACUUUCCAAUAGUUGUGAGAUAAUUAAUUCAUAUACUGUACCUGUUGCUAUAUAAGAGCAAGUUCAAUAGUAUAGCCAACUACUAGCUCCAAUUCAUCUAUAGUCAAUCUAAUAGCCCAUUCAUACAAUAGUUACAUACUACACUAUUAAUAUCUAGUCCCACCUGUCAUAGACACACUGCGUCUUGGAGUCCGUGCUACAGCUGGCUACAAAUCUGUAGCCCGUUGCUCUUCUCUCUCUUGAUUUAUCUUCGUAAAAUAUGUUUGUAGCUGGCUUAUAGCCUGCCAUUGUACCUGCUCUAACGCAGCAAAGUGUGAUGAAUGUUGGUGUUGAUGAUGGGAUCAUGGGAAGUAACCAUGAGAUAACAGAGGUAUUGUUCGAUGGAGUAAGUGUAUUAUAUGUAUGUAAAUAUUAUAUUAUUGUAAAUCAUUUUGAGGAGCUAGACUAGCGUGCCUUAUUAACAA
Sequence
(XR_003238326.1):
GGACUAAUAAGAAAAUGCUGCUAAAUUAGAAAAUAAAAACUAAAAAAAAUAAAGGGUAAAUGGGUGGUGGGCCGAAAUCAAUAGGAUUCGGCCCACCACCGCUAUUGUGCGGCCGGCCCAUCGGCCCGAGGGGAAAAGGGCGCAGGGGGCGAGGGGGUGUUACGGUUAGAACCCUAACCGUUCCCCUCGCGGUGUGCGCCGCCGCCGCCACCGAUUGGCCGCGCGUCCUCCACCUCUUCUGCCGCCGCCGCCAUUUCGCCGCCUCCUCCUCCACCACUUUGGCCGCCGUUUCCACCGCCGCCUUUCUCAUCCACCGCCGAUCCCAUUUCCGCCGCCACCUUCUCCCCCUGAAACGCCGCCACCGCUGCCUCCAUUUCCGCCGCCGCCCACCACCGCCUGCAUCCACCGCCGUCUCUACCGCCCGCCGCCGCCAUCCACCGUCCGCCGCCGCCGCAUCCCCCAUGUCGGCCGGCGGUUUGCCGGCUAGAGUUAGGCCGACGGCCCCAACUCCUCAUCGGAGUCGGAGACCGGUCGAGCCCUUACACCGUUCCCCAUCCCGCCAUUUGAGAGCGUGCGGGAGCCAUGGGGAACGGCGAGCCAUGUGGAGCGGAGGCCGGGACGGCGAGCAGUGGCUUCACCGGCAUGACGGCGAGACGACGAUGGGUUGAAGUAGGCCGGCUCCCCCGUGCGCGCUGCCAUGGUUUCGUUCCGGCCGGACUCCGGUGCCACGGGAGUGGGGGAGCGGCGUUGGCGUGGCGUCGGCGACGUCGUGGCGCGGGUGAUGGCGGGGUUGGAGUAGCAGCAAUGGUGAUGCGGCGCCGAGGGUUGUGGCGGCGGCCACUAACCCUAGGCCCGCGCCUGGCAUGGUGAUGGUGGCAGUGGUGGCGACUCCUCGUUGUACGAUGGAGGAGGUGGUGCAGAUGGCGGGCUCGGUCAUGGCGAGGAAUACCAAGAACGGCGUCGAUCGGCCAAGAACGGCGUCGAUAAGUAACUGAAGCAGGUAUCGACAUAUAUUGUGCUCCGGCCCGUUGCUGAUUGAUUCCAGGUAAGUUUGGCAAAGCGUCCAUGACUCAUAUUGUCAUAUUGCCUCCAUGACAACAAGCGAGGGGAAAUGCUUUAGGUGAAUAACCGGAGGAAGUAUCCGGAUGAUGUAUUUGCUCCUGGUCUAGGUGAAUAGCCUUCUCUGGACACUGUUGUCUGCCCUGGAGGUAGUUUUGAUAACAUUGACAGGUAUCUGGAUUGGCAGGUCCCAAGUACGACGGAGAGGCCGGCGCAGAUUAGAGCUGAUCUAUAGGUAAUCACAUAUGUCCAUAAUAUAUGUUUUUUUUAAUAUAAAUGUUUCCGCACAACAAAUUUGUUUCAGUGCUCCCUCAGUUUUCUGGCGCCAACUUUCCAAUAGUUGUGAGAUAAUUAAUUCAUAUACUGUACCUGUUGCUAUAUAAGAGCAAGUUCAAUAGUAUAGCCAACUACUAGCUCCAAUUCAUCUAUAGUCAAUCUAAUAGCCCAUUCAUACAAUAGUUACAUACUACACUAUUAAUAUCUAGUCCCACCUGUCAUAGACACACUGCGUCUUGGAGUCCGUGCUACAGCUGGCUACAAAUCUGUAGCCCGUUGCUCUUCUCUCUCUUGAUUUAUCUUCGUAAAAUAUGUUUGUAGCUGGCUUAUAGCCUGCCAUUGUACCUGCUCUAACGCAGCAAAGUGUGAUGAAUGUUGGUGUUGAUGAUGGGAUCAUGGGAAGUAACCAUGAGAUAACAGAGGUAUUGUUCGAUGGAGUAAGUGUAUUAUAUGUAUGUAAAUAUUAUAUUAUUGUAAAUCAUUUUGAGGAGCUAGACUAGCGUGCCUUAUUAACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
15.24%
HE_num:
HEP:
84.55%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.92
Avg Expression:
332.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 2.03090606113635 | 0.00843950509310732 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.18507547019284 | 4.0415117454675e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.52621089296385 | 0.00013688397744563 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.57659604073435 | 1.05222290018413e-05 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 2.38342368415901 | 7.74103760179149e-13 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 3.68013371040149 | 4.39475906821785e-85 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 3.92565072589377 | 1.79530772920168e-99 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.20089104627374 | 3.56008791692194e-12 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.00357179874351 | 5.61221948550323e-13 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.17997657926477 | 4.1450798020759e-06 |
| 11 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -1.05460904490671 | 4.20417229985511e-07 |
| 12 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -1.07988535789395 | 8.12407933867893e-32 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.53599625853365 | 1.17870089116737e-06 |
| 14 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.31427597738054 | 2.08421888840254e-29 |