Chr:
Chr8
Start:
11316838
End:
11317966
Strand:
+
Ref_name:
LOC112936173
Sequence
(XR_003238319.1):
AAUGUAUAUCACGUUCCCAAAAUAUAGGCUCUGAGAGGCAGUGGCCGUGGGCACAUCUGGGCUUUUUAUCGAGGGCGCCAGCGCCGCCUCGGACCGCCGCCUCCGUUGCCGGCGCGUCGGAGGCUCGGACCCCCGCCUCCGGUGCUGGUGCCUCACACCCCUGCCUCCGCUGCCGCCGCCUCGCACCCCCGCCUUCGCUGCCGCUGCGAGCCACGCGGUUGCUCGUCUGGGCGCAUCGAGGGCGCCGGCGCCGCCUCGGACCGCCGCCUCCGGUGCCGGCGCCUCGGACCCCCGCCUCCGCUGCCGCUGCGAGCCGCGCGGUUGCUCGUGACAGCGGUGCGCCUCCAACUGUCGCCUCCGCUGCCACUGCGGAGCUGCAAGGCGCCGCCACCGGCGACCAAGCAGCGAGCAGCCACCGGUGAUUGGCAGCGACUCUUCCAAUCCAUCACCGGCCUCAGCCACCGCCUACCUCGGCACAAAACUGGGGAUGGACAGAAGUUGGAUCAAUAGUAGGCUAUUUAGCAAGCCGCAUCUUGAUGGGGUCAAUGAGUUCAUGAAAUUUGUUUUAGAAAGAUUUGAUGAGAAUGCAGAGAUACUUUGUCCAUGUCGAUGGUGUUUGAAUCGGAUUCAUCGACAGAAAGGACAUGUGGAGGAUCACUUAUAUAUUUAUGGGAUAGCCAGCACUUACACUAGAUGGAUAUACCAUGGAGAACAAUCCGAUGCCGGAAUUAAUGAAAAUGAAGACCAUCUGGAUGAACAUACUAGUUUUAGUGAGGAUGUUGGUAUAAAUGAGGAUGAAGAAGAGAACCCUCCCGACAGAAUUCCUGACAUGGUAGAUGAGUUGUACAUAGCAGAAGGUCAAGAUGGAGGGAAGUCUAUGUUUGCAGCUAUAUUAGAUGAGAUGAAGCAGUAACUUUACCCUGGUGUAGAUUGUACAAGAUUUUCUUUUGUGGUGAAGUUACUUCAUAUCAAGUCAUUUUAUCCAAUCAGCAAUGCUUGGGCCUAUUGGGCCUUUUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.63%
ME_num:
MEP:
34.96%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.84
Avg Expression:
1.82
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.36077283449833 | 0.000652716978967927 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.40833950322894 | 0.0158555344054075 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.09363910839671 | 1.67328536129214e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.13097112153319 | 0.000910274912716599 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.68659421809365 | 0.000189264012638226 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.72741424387977 | 3.58742412043759e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.2983846520487 | 0.0200458325751437 |
| 8 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.59037652272188 | 0.00463219463907602 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.12480092467023 | 4.18220844697443e-06 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.62220634515117 | 1.17492890368637e-05 |
| 11 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.08220532350708 | 0.00122494465382869 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.08211466119804 | 0.00124663863278372 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.0820411624936 | 0.00123006311429258 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 5.35345645805422 | 0.000128665458536395 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.32537992431484 | 3.40223291717805e-05 |
| 16 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 5.82082112973159 | 3.02755520684291e-05 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.0388103798866 | 6.08360261857317e-07 |