Chr:
Chr8
Start:
18184569
End:
18185548
Strand:
+
Ref_name:
LOC112936171
Sequence
(XR_003238297.1):
GUCGUUGCCGUUGCAGUCCUCUUCUUCCAUGCCGAUGGCCGCAGCCGGCUUCUCCAACAGCAUCUAUUUGCAUGGUUUACCAUUGGGACUCUGGGAGUAUAUGUUGUUCUUCAGCCUCUCGCUCUCCGAUCCCCUGACGAGGCGACGACGCGGCGGGCUCUCGCGAACCUGUUAGGGGAUCGAAGCAGGGUUCGUCAGGCCGCGACGGAGGGUGAGAUUUCGUGCGGAUCGCAUUCCGGAGACGGAGGCUACAACCGCUUGGUCGUUGUCGGGGAUUGGAGAUGCAGUUCUGAGAGGCCGCAGCGGCGGCGAGCUUUCUCUGGACUUUUCUCAUCCUGAUAUCAGGGAUCGAUGCAGCAGUAUACUCACAUUUUGUGGUGUUCAUAUCUCCUGAUCAUUCAUGAUGAUUCUGCCCUGGUAAAUUUGGAGGAUUUUUUACGCCAUUGCCAUCUGAUCUGAGUGAUCAGAGCUUUAUGAAGUAUUUGGAGCAGAAAAUGCAGAAUCAAAUUGUAUAAGGAUAUCAAGGCAUAAUGCGACAUGGAUGAAUCUGAAGUCUGAACUCGCCUGGUUGCAUGCAGGUUCGGCAACAAUGCCCAACAUCUCUGAUUGUCAAUCAAUGGUUCAAGGCACGAUCCUCAUCACAAUGGCACUGAAUAGAUCAAAGGCUACACUAACAAGAAUCCAAGCAUGAUCGCGAUAGCGGGUUCGCGGCAUCCACCAGGGAAAAAUAAAGAGGGAAAAAAUAGCAAAAAAAAAAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
74.39%
ME_num:
MEP:
24.39%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.94
Avg Expression:
7.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.0774429931318 | 4.66411659891245e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.77508263324652 | 3.7686996713025e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.06297525441468 | 0.0351001066237403 |
| 4 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 2.04855244950848 | 0.0294103891465655 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.44071182811068 | 8.58721571107209e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.18367048112554 | 0.0142160590988032 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.71738113863556 | 0.00181453521200105 |