Chr:
Chr8
Start:
5735156
End:
5736243
Strand:
+
Ref_name:
LOC112936163
Sequence
(XR_003238285.1):
UCCUCCCCUCUCUCUCUUCAUCUCUCUCCCCUCUCCUCUCUCUCCAGGCGCCAUGGGACGGGAAGGUUUGGCGGCCGGCGGCACAGCGGCGGCGGCGGCGGCGGCGCAAGAGAAGGGGAGGGCGCAAGAGAAGGGGCGGCCGGCCGGGUUCCUCAAGGGCGGCGACGACCUGGACGACGACGACAACGACUGCGGCAGCAAGGAGGCGGCGGCGGGAGCGCUGGGUGAAGGGGUCGCUCGUCCAUCCCCUCGGGCGAGGGCGCGGGGAGACGCCGCGGGAUUAGGGUUCUGUGGUGUUGUUUUUGGUUUUUUGCUUUCGGAUUGGAUUUCGGGGCGGCGGGGGCUCCUCCGGCCAGCCUUCCCUCGCAUCUAACCGCAGGUAACGAUUGAUUGAUUGAUGGAUUGGAUGUCCCCCAUGAUUUGAUCUGGGGACAAGCGGCCUCCGCCGGUGCAUGUCCUCGUCCCCGCACCACGGCCUCAGCACCAUGAUCCGUCCGCCGCUGCCGCCGUCACCGCCGCGUCGCCAGCCGCCGUCGCCGGCCGCCGAACUUCCCCGUCCCGUGGCGCCUGGAGAGAGAGGAGAAGGGAUGAAGAAGGGUAGGGAGAGGAUGACAUGUGGGGCCCACGUGGGCCCACCAUUUUCUAAUUAUUAUUUUGUGUAACUGACAUGUGGGUCCCACGGGUUUUAUUAUUUUUCUUGGAUGAAUUGCCACGUAAGCGCCACGUCAGUGCCACAUCCGAUGAAGACCGAGUAAAAAUAGCCACGUAGGCGCCACGUCAGUUAAAACCGCCAUCUAAACCGCCGAGGGACCUUAUGUGCACCGGUUUUAAUAGUUGAGAGACCCAUUAUAUCUGGUUUUGGGGUUAAAGGAUGAAAAUUGGAUUCGUUGACAAGUUCAGGGACCUCGGAUGAACUUAUUCCUAGAAUAAUAUAUCUAUAUGGAGAACAUUGGAUAAGAUAUAAUGAUAAUCUCCCAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.31%
ME_num:
MEP:
67.48%
HE_num:
HEP:
13.01%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.75
Avg Expression:
7.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.23555262031998 | 0.0446905475446768 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.15643847867195 | 8.83973613199978e-21 |
| 3 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -1.04828019291492 | 0.0200137990702488 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.16192115367162 | 0.0461052153148594 |
| 5 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.18970255108021 | 0.00503331494556287 |