Chr:
Chr1
Start:
27431067
End:
27435271
Strand:
-
Ref_name:
LOC112936162
Sequence
(XR_003238282.1):
AUCAUACAAUCCGUACUAGGAGUCCUUGUCCAUUUAGAAAAAUCAAUUGCAAAACUAUACAGUAUAUAGAGUUAUGAUUCUAAACCAACAUACAUUGCCGCACAUAUAUAUAUAUAGGGUGGAGAUACCAGACCAGCACGUUAGGCUGCAGCAGCAGAAAAAUAAUAUAGUGCCCUCAUUUCAUACAAGUCUACGAACCCAAUACGAGAUUAAUUAAAAUUUGAAAUGAAAAACAAAAUAAAAUCCGAAAUUAGAAAUAAGAAAAUAAAAGAAGAGUUCAACUUGGAAUGCGAUUUAAAAAUAACUGAAAUUCGUAAUAAAAAAUAAAGACUAUUUAAAGAAUACACCAUCUAGAACACAUAACGAAAUUAAUUAAAAUUCCGAAUAAUUAAUAAAAUAAAUUCUGAAAAUAGAAUAAAACAACUAGGAAUAUAAUUUAUAAAUAAAAUCUAUCGGAACGAAAAAUAUGGAAAUUUCAAAAAAAAAACAUCUAGAACACAACGAUGAUAAAUGACAAUAAAUAUCGGAGAAGCAACGAGGCAGGGAGUAGAGUGGUGACAGCUGAUGGGAUAUCUAAAAAACUAUUAACAAAACCCCAAAUAGAAUCUCAAUGACAAUUAAAAAGAGUGAUGACGGACAGGCCGUUAAGCAGCACGGUCACGACGGUUAGCGGGAUUUCUAAAAAAGUAAAAAAAUAAACCUCAAUGAUAAUCAUGUUCGAUUUUAAAAUUUCAAAUAUAAUAAAGAGUGGGAGGAAGCGGGCGAGCCAUAGAGUAGUACAGUGGCAAAGCCACUAACGGUUUGGUGGGACUCUAGAAAGUAAAAAAUUAAACUCAAACGAUGAUUAUAUUUGAUUUUUAAAAUCCCAAUGACAAUAAAGAGAGGAAGCAACUGUAGCACCCGUAUUUUAUUUGCUUUUAUUUUAAAAAAAAAGCUUGUCAUUUAAAAAUUGGAGUUAAUUUGGUUCUUAGAUGAUUUUGUGCCAAAUGGAUCUCAAAUCCUCUCUUAGAAUUGCCUUUCAAAUUCCUGUGAAACUCUAGGUCAAAUUCAAAUUCAAAUCCCUUCAAAUUCUCCUCAAAAUUCAACUCUAUAAAUCCCUGGGAAAAUGUGAAAUAUCACUGUUCAUAUUGGGCCUCCUUCCCUUCCCUCUCUCUCGGCCCAACUCUCCUCCACCUCUCCUCUCUUCUUUCCCCUGAGCAGGCCGGCCCAGCGCAGCCCAUUUCUGCUCAUCGUCCCCUUCCUUGAGCCAGCCAGUGCAUGCACACAAGGUGUUCGACGAAAUACCGACCCGAGUCGCUGCACCGUUCCGCCCUCGUUCCCGUACCGCGUUGCACCAUACCACCCUCCCGUGCGCCCCACAACGUGCCAGGGCCACGUAGCGCCGCCCCGCACGCCGCGCCAAAGCCGCAUCGCGCCAAACUCCACGAAAACCGCCGCGCCCUCUCCGGGAGACACGGAGCCACGUCGCCCCGCGUCACCCCCGUCUCGUCGCCGUUCCAUCCCGAGCUCUCGCGGACGCGCGUCCCUUCGCUGUCGCCCGUCGUCUUGUCGUCUGUCUCCUCCCGGGAAGCCGCCGAGCUCGCGCCUCCCUCUCACUCGCGUUCCAUCGCCACCACCGUGUGACGUCGCUCGCGUCGCAUCGAUCUGAGAACCCUACCACCCAAAUCCCGGCCGUAGCCGCCGUCGGCCGCGCGUCAUCGAUGUCCCGUCGCCUUUCCCGCUCUCCGCGCGUCACUUCGUGUCGCGUCGCCGUCGUUUUCACCGUCGAGUCACCACCGGUGCAUGACGCCAAGCCAUCGCGUCGCCAUCUCGUCCACCCCGGAAUCCCGCCCUAGCCGCUAGCCAGCUACCCCCGGAGCUCCGCGUCUAGACCGCCAGCUCGCCACCGCGCCGCUUGCCUAUAAAAGGGGAAGCAGCCCGAGCUCCUUCUCCCCACACCAUCACCAUCUCUCCCCAUCUCUCUCUCCUCUCUCUUUCUCUCGUUUUGCUCUCUGUUGCUGCCAGCCAGAGCCGCCGCGCUAUUCUCCCGGCGCCGCCGUCGCCGGUGGAGCCUCGCCGGAGUUCUCCGCCGCCCUCCCUCAGCCGCCGGUCGCCUCGCCGCGCCCCAUCGCCGAGACGCAUCGCUAUCCCAGACCGAGCCGAGCAAAAGAGCGAGAGGAGGAAGAAGCAGGCCUCCUCAAGCCUCUGCCAAGCCGGCCCCACCUUCCUUUAUUCCUUCCUGCCACUGACGAGCAGGGCCCGUGUGCCUUUUCCUCUCUAGCAGCCACCGACAGAGCCCGAGUUCGAGGAAGCUCCGGACGCCGCUUUCGAAGGAGAAGACCCCAACGCUGUGCAAGGCAAGCCCCUUUGAUCACAUUGCCCCUAUAUUUUCAAUGAUAUGUUGUUUGCAAAGAUGCAUUGUUAGUUCACACGAUUAACAUGUUUAGGCCUCGGAUUGUUUAUACAACCGACGGACCAACCCAGUAGUCGCACUUAUAUUACAUAGGUUGAUGUUUCCAUACCAUUGAUAGCUCCACAAAUAUUUGCGCCGGUAUCAUUAUUCGAUUACCGAGGUAGUUUCGCUUAGCCAUGCUUACGUUGUUGCCGUGUGGGAAACUUGGGUUAUUCCAAAUCCAUGUUUAAAAAAAAUCCGGUAUGUUGUACCGAGGAAUUGUGAAAUAAAAUGUGUUGUGAAAGUGGUGAUGAUGCGGAGUCAUGCCUUUGUGGUUUGGCUACGUAUUGUCGUUAAGGACCGAUUCCUUUGGGAAAUCCAUCCAAACACGUUACAGUGCGACCACACGGGUAUUUAUGGGAUGCCUCUGGCUAAGUAAAUUGUUUUCACAUGGGAGUUGGUGUGCCGAUGGUUGUGGAAUGCCGAGGAUGAGGAGACGAAGUGUUACACAUUUUUGCCCAUCAUGGGUGUCUUUUGCCUCUAUUGUGGCGUGGUACCGGUAGGAGUAGGAGGCAUCCUCGGUAUUUCCUGAGUGGAUGACGGCUGUCAUUGCCUGAUACUUGGCUAUGGAUCUUAGCCCAACUAGGUGGCAUGCGGUUUUCAUGGGUUAGCUUUGGAAAGGCCUUAUCACGAACUUUCAUUGCCGACGGGUAAACGAUGUCAGUUUCGUGUCGUGUGGGUAAAGCGUGCAACCUCUGCAGAGAUUAAUGAACUGUUCGAACAGCCGUGCCCACGGUCAAGGGCGAGUGUAAGGUGUUUCUCAUAGCGUAGAUUUGUUUGACAAAUGUUUGUGAAGAAGUGGUUACAGGGAAGGGUAACGUUACCAGAGUCCGCCUGUGUGGCAGACGGCUAACCUGGGUGGUUAGGAACGGGUCUGUGUGACCUGGGGUGUCGUCUGACACCGAGGUGUUGUUAGGGCCAUGAAGAUGGCGUUGUUGUGCUGAGAUAACUGUGUGGACUAUGUGUUGUUGUGAGAAGAAACUAAUAGAGGAACAAAUUAAUUUGCUGUUCGUUAAUCGUGACAAGUUGUUGCAAAGCAACUUGUGGAAUGGGUCGAGGCGUGAGCCUCCUCCCGACAACUAAAACUUGACUCACUCACUAGGAGUUUUGUGAAAUAAAUCACUUUGCCAAAAAGGCAGCUUUCGCAAAUAAAACCUUAGCCUCCUUGUUUAAACCAAACAUGUCAUUCUUUCCCCUGGCUUGCUGAGUACGUUAAGUACUCACCCUUGCCCCUUAUAAUAUUAUAUAGAGUAUGGAGAUGAAGACAUCGACCCGACCGCCGAGGAGUAUCUCCAGGAGCAAGCCGAGUAUGAAGACUUCUAGAUGUUUCGUGCCUAGCCCCAAGCCUCGCCUGUGGAAUAAGAUAGAUGCCUAGGUUAUUCGCCUAGUGCAUAGUUGCUUAGUCGCUUAGUGCUCCGCGCUGUUCGCUUCUGCGCCGUUGCUUUUAUGGUUUUCUGUAAUGUUGUGUUGCUCAUCUAUGGGCCUGUCCAUGAUAGCAACUUAUGUAAGGACUACUACCCAGUGAUGUAAUAAAGCAGUUUACUUUGAUUCCACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.63%
ME_num:
MEP:
32.72%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.70
Avg Expression:
1.71
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.95675465666807 | 1.11661351520828e-13 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.30015687080078 | 6.91186929972515e-13 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.31576452261841 | 4.26045990821333e-16 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.48129502936593 | 6.05855455024407e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.34962970757526 | 7.57821697386304e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.52221290003754 | 7.98891194237045e-11 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.93122580116129 | 7.07241446219698e-17 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.67145123202469 | 0.0416665932773709 |
| 9 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.16424327269437 | 0.00033194324695606 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.14629837297557 | 2.114389462565e-06 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 3.06289787614062 | 1.20269662514748e-06 |
| 12 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -1.60736382452414 | 0.00891573833101529 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.01470534023309 | 6.5352133286277e-12 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.94325138018813 | 1.37761803778665e-18 |
| 15 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.85850142236937 | 1.11603932874e-11 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.92893974979586 | 2.2739870320214e-13 |
| 17 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.48396386192811 | 7.74019048576248e-10 |