RiceNCexp:Browse

OSA-LNC112936156

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr8

Start:

27354749

End:

27356529

Strand:

Ref_name:

LOC112936156

Sequence
(XR_003238260.1):

UGGUGCAAGGCCCAUCUAAAGUACAGCAACAGCUUGACCGGCCCAAACAGAAUGGUCCAGCCUGCCACCAGCUGCUACUACACAAUUGCUGAAGUCUGUCCACACACGAACUCCACAAAGCACUCGAUCGCUGACGGCAACACACUGUAUUCCACUCAUCCACUGUACCGUGUGGAGAGCAGCUGCAACGUGUGGCUCUAACACAAGCACCAUUACAUUCUAGCCCAUUUCUGCCUUACUAAUCUGGAUCGUGGAUGGCAGGCUGGGUGAAAAUGGUCACGAAAGUUGUCGAUUGACUGAGCGUUGUUUCCAUAUAAAAUGUGCACAGUCAAAAUCGUGUGUUGAAUCCUCUGUCAGCAAUGUACAACAUGGAACAUGCUACAAAUCUUGGCUUGCAAUGGAUCUAACGACUGAGCAACUACUACUACUACUACUACUACUAGAGAUGGCUGAUGGCAGAAGAUCUGUCAGAAAUGCAAAAGAAAGACAUGGCAGAAGAUGGCCGAGCAUGUGUUAGCUCUGAACAGUGAAUAUAAUUACAGGAAGAGCCAACCGUUGACAAUGCAGAUCACCAUUCUCAUUUGCUCCAAAACUUGACUCGAGUAUUCAUAUAUACUACAUCAACGGGGCGAGCAUCACAUGCUGCAAUGGCAAAUAGUAUAGCUAAUCACCAUUGACCAGCUUCAGCAAGUGGGUGUUUUAAGUGUUUUCUCUGUGAUGAGCAAAGCCUGAUUAAUUAGCAGAAACUUCAAACAUCAGCGGCAGGUAAAGCAUCAAGCCCAAGCAGUACACGCAGAUCUAAAAGCCAAAAGGAAUGACCAGCUUCACAAGUCAAAUGCGACGUUUCCUCCUCACUCUCUCACGCACCUACCGAGCUGUUGAGACGCCACCGACUGAAAAAAUUCAGAAAAACGCAAGCUUGCAGGCUGCAGGUGUGUGUGUUGAGGACGAAAGUUUGGUUGCUCUGAACUGAUUCUGAUCUGCACGAAAAUGUGCAAGCAAAGGAACAGGGAGGCGUACGUACUUGAGGACUAACUGACGGACGCUAAUGAUCUUUUUCUUCUGUGAUGUUGAUUAAUUAUAAGCUGGGUUGUCUCUGUCGAGCCAGCCAUUGGUGUCAAGUUACGGGCAGAUAGCGACUACGCAUCUGCAACGAAUUGACGGCAAAAGUACAACGUGAAGCCAAUACGAUUAUGAUGCUGCUCCUAGGUUACUACUACAAGCAGCUUCUUUCUCUUUAAUUGAGUAAUUAAUUUUUAUCCUACUACCAAAUGAGCUACUGCUGCUACUACUACUACUGUGAUCUCCUAGACUCCCUAUUUCUAAUAGCUGGGCAUGAAGCUUCCAACUCAGCCUGCCUUUCUUUCUGUGCUUCUCUGAAGAAAGGCAUCUCUGCAAAGUCUGCAACUUGAGGACAACACCAAUUACUGCCCUCUGCACAACAGGUGAAGGGAAGAGAAGAGCUGGUAGAAUGGCUAGCAUGGAACAGAACAAAUUAAGUUGUGCAGUGAUCAUGUCAUUAGUGCCAGCUGAAAAAAUGGGACAGAGGAUCAUAUCUACUUGUAAUAGAGUACACUAUAGUAUAGCAGAAGUGUUGUUGUUGCUGCACCACUCAACUCACAAUUGAUAGGCUGAUCUGGCCAUCACAUGAAUGAAAGUAUGUAUCAAACUUUAUACAAACCCCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

422

LEP:

85.77%

ME_num:

MEP:

14.02%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

shoot

Tau :

0.82

Avg Expression:

0.65

Tip: OSA-LNC112936156 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	4.43886857439263	5.52855332996721e-06
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	3.66126437290544	0.00284458685025522
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	4.54783061763946	8.30355559521061e-06
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	4.53643203056983	8.3730388346156e-06
5	Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days"	-3.54066943621904	0.0224358023278918
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	4.03851792009167	6.59464601742742e-05
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	2.81155640781353	0.0145507919648741
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	3.34880999882978	0.00413264966591578
9	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	3.90936607061638	6.52789129240217e-05