OSA-LNC112936153


Function Link


Basic Info

Chr:

Chr8

Start:

28309737

End:

28317188

Strand:

-

Ref_name:

LOC112936153

Sequence
(XR_003238242.1):

AUGCCUUAUCAAUUCUUUGGCAAUUUUCAACAAUGUUUCCUGAUGUUUGGAUUGGUACCCAUAUCUCUUAAUUAGUACAUACCAGACGCGGCCGGGCGCAGCUGGCACAGUGGCAGCGCAGGAGAGUCGAGGCGGCGGCAAGUGGCGACAGGGAGUUUGGUGGUGGCGAUGGAGAGGAGGCCGUGGUGCAGAGGAGGGGCGGCAGCGAAGGGCUCGGGACCGAGGUGGCUCGGUCGAGGCAACGAUGGUAGGAGGUGGUCGCGGAGGCGGUGCCCAUGCUGCCCGUCGGGAUGGGAGGAAGGUUGGUGAUGGGGAUGGGGAGCUCGGCGACGGCAGUGGCAUGGGGGUCGACAGCGAUGGGGAUGGAGAGGUGGCUGGUGGCAGGGAGAGGGGAAGAAUGACGAGGAUGUUGCUCCCGGCGACGGUUUUGCUUGGGCGAUGGCUUCCAGGAGAAGGAGAGGCCGGAGUAGCAUAGUGGCGACGACAGUGGCGGUGACACCAACACGAGAGGAGGGUCGUACAAGGUGAGUCUUCUCGCCGGUCUUCUAUUUUCGGUGUGGACUCGGUUUGCCGUGAGUGUGGUCUCUCUCUCUCACUACUUCGCCGGCUUUUGUGUGAGGGCUUUGGUUGACGGGGAGUAGUGGUGCACGAGCGGCGACUGUUGAUGGCGGUGUUGGAUGUGAUGGACGGCGGCGGUGGGGCUGGACGUCGACAGCGACGGAAGGCUUGCCGGAUAGAGAUGCCCCUCGGUAAUGAAGGGGAGAAAGGAGAUGCGGCGGCGACAGACUGUCGAUGACGGAGGCCGCAGCGGGACGGGGUGGUGGGAGGCCGGGAUUCGGGAUGUGGUGGAGACUGGCCAGGUGGUCGACGUUGAUCCGGCGGCAUAGGACUCGGUGGCGGCUCGUCCUCCACCGACACCCAGUCACCGUUGGGAUCAGUGGAGGGCGAGCCGGCGGCGGGGAUCGGUGGCAGAUCGGAUCACCACGGAAGGCGUCGGCGGCGACCUGGCCACGAGAGGACUUUGUGCGGCAGGGAUCGGUGGAGCAGAACAGCGUGGAAGGCGUCGGCGGCGACGUGAAUCCGGGCGGAGGACAAGCGAUGGGGAUCGGUGGAGGGCGAGCCGGCGGCGAUGGCAGAUCGGUGAGGCAGAGGACGGCGCCGCGGCUGAUAGGGAGGGGAGCGCUGAUGGCGGAGCGGUUUCCGGCGUCGCGCGUGCGGGAGCGGAAUCUGGGAGAGGCGCGGUGGGAGAGCGAGAGAGAGGGAGACGGGCCGUGCGGUGCCGAGGGAGGGGGCAUACGGCGAUUGAGGGAGGUGGGAGGUGGGAUCGAUCCGCAUCGUUGGGAUUUCACCGAGAUGAUCUGAACCGUUCCAUGAGGAAUGAAAGAAUGAGUGAUGGGUGAAAGUAUUUGUUGAACUAGGUAGAUAGAUAGAUUUAGAUGGGGGAAACAUCAUGUGUAUUUCUAUAUUUAUAUACUAAUAUAAAAAGGAGGAGUUGCCUCCUUGCAAUCCUGUAGGUGAAAUCAAAGAAAACCAGGGCCCACGCAUAGACACAUCGAAUCCCCAUCCCCAUCGCCACGGAUUCCUCUGCCGUCCUCACCCCACUCCCUCUAUCACCGCAUGUCGCUUCCCCCUCAAUCACUCUGACGAUAGCUUCCUCCUCCCCUUGAUCUCGCCCUCGAUGACGCGCCACCUACACACGAUUUCGCCUUCAACAAAUUCACUCGGCCUCUUCCUCCGCUCGAUCUCGCUUGCUGUCUCCUUCACCGCUACAAAGCCUUGUCGCCCGCCUCCAUCGUUCUCUUGUGUCGCCGUCACCAGCAAGACCUUGCACCGCCGCCGUUGUGACCCUCGAUCCACGCCGAGCUUCCGCCUCCAAGGCCACAGCGAUCUCUUCUUCAGUUCUCAACUUACUACCGGGUGAAAGAAGCGAUGUUGCUCUUUCUUUUCUGUAGAUUUGCCUCCUCUGUGUACUAGCCUCAUUCUCCUCAGGUUGCGUAGAGGAGUAAGGGAGAAAUUUCAGAACUAUGUACAAACAUACUCCAAUGAUUUUGCUACCAUAUACCUGUUCAACUAUUUACUAGCCAUCAUCCUUGUCAUAUGCACUAUAUGAGAAAUAAGAGUAUCCAACUCAUCUUCUGGUCAGUGUUCACACACACUUUUUGGUUUUAUUUUUUUACUUCUAUCUAUUCGUUUUUAAUAAUAUGUGUAUUAAAUACAUUUUUACUCAAAUAAAAUAAUUUUAGAACUUCAUUUCAUUAACAGAUCUAAUAUUUGUGUAUGAUGUUUGCAAGGACGAGAAACAAUAUUGAAGGAACUGCAAAUUACUCUCAGAUGAUCUUUACAAGAAUGGAUGAAAAUGAUCACUUAGUGUUGGGUUCCAACAGUAUGAUCCACUUAUACUCUGUAAUCAUGAUGCAUGUUUUCUGACAUGUAUGUCAAGUUUAUGCACUCCAAAUCCUGUCAGUGAACAUCUAGAGAAGCUAUUCAGUUUCAUUGACAAUAAAAAAGAGGUGGACCCGUCGUCAGACAAAUUACAGGGUCCAUUACUCUCCCCCAAUCUCCCCCCGCAACAUUUUCUGGUGGUGAUAUUCUGAGUUCAUGUUUAACCAACAAAUCAAGGCGCUUGCUUGGUCUAGAGUUCCACACCAAUGGUUAUAGUGGUUUUAGCGAUGACCAUGAAUAUUUAACUAUUGCCUAACCGGUAUACAGUCAGGGAGCCAUGUCUUAGAUCCAUAUGGUUAGCUCUUAUUCUACUGCUCACUUUGCUUCUUGCCAAAGUAGUUUAACGGUGUUUUGGUUUUAGCCCUC

Sequence
(XR_003238243.1):

CCUUAUCAAUUCUUUGGCAAUUUUCAACAAUGUUUCCUGAUGUUUGGAUUGGUACCCAUAUCUCUUAAUUAGUACAUACCAGACGCGGCCGGGCGCAGCUGGCACAGUGGCAGCGCAGGAGAGUCGAGGCGGCGGCAAGUGGCGACAGGGAGUUUGGUGGUGGCGAUGGAGAGGAGGCCGUGGUGCAGAGGAGGGGCGGCAGCGAAGGGCUCGGGACCGAGGUGGCUCGGUCGAGGCAACGAUGGUAGGAGGUGGUCGCGGAGGCGGUGCCCAUGCUGCCCGUCGGGAUGGGAGGAAGGUUGGUGAUGGGGAUGGGGAGCUCGGCGACGGCAGUGGCAUGGGGGUCGACAGCGAUGGGGAUGGAGAGGUGGCUGGUGGCAGGGAGAGGGGAAGAAUGACGAGGAUGUUGCUCCCGGCGACGGUUUUGCUUGGGCGAUGGCUUCCAGGAGAAGGAGAGGCCGGAGUAGCAUAGUGGCGACGACAGUGGCGGUGACACCAACACGAGAGGAGGGUCGUACAAGGUGAGUCUUCUCGCCGGUCUUCUAUUUUCGGUGUGGACUCGGUUUGCCGUGAGUGUGGUCUCUCUCUCUCACUACUUCGCCGGCUUUUGUGUGAGGGCUUUGGUUGACGGGGAGUAGUGGUGCACGAGCGGCGACUGUUGAUGGCGGUGUUGGAUGUGAUGGACGGCGGCGGUGGGGCUGGACGUCGACAGCGACGGAAGGCUUGCCGGGUUGCGUAGAGGAGUAAGGGAGAAAUUUCAGAACUAUGUACAAACAUACUCCAAUGAUUUUGCUACCAUAUACCUGUUCAACUAUUUACUAGCCAUCAUCCUUGUCAUAUGCACUAUAUGAGAAAUAAGAGUAUCCAACUCAUCUUCUGGUCAGUGUUCACACACACUUUUUGGUUUUAUUUUUUUACUUCUAUCUAUUCGUUUUUAAUAAUAUGUGUAUUAAAUACAUUUUUACUCAAAUAAAAUAAUUUUAGAACUUCAUUUCAUUAACAGAUCUAAUAUUUGUGUAUGAUGUUUGCAAGGACGAGAAACAAUAUUGAAGGAACUGCAAAUUACUCUCAGAUGAUCUUUACAAGAAUGGAUGAAAAUGAUCACUUAGUGUUGGGUUCCAACAGUAUGAUCCACUUAUACUCUGUAAUCAUGAUGCAUGUUUUCUGACAUGUAUGUCAAGUUUAUGCACUCCAAAUCCUGUCAGUGAACAUCUAGAGAAGCUAUUCAGUUUCAUUGACAAUAAAAAAGAGGUGGACCCGUCGUCAGACAAAUUACAGGGUCCAUUACUCUCCCCCAAUCUCCCCCCGCAACAUUUUCUGGUGGUGAUAUUCUGAGUUCAUGUUUAACCAACAAAUCAAGGCGCUUGCUUGGUCUAGAGUUCCACACCAAUGGUUAUAGUGGUUUUAGCGAUGACCAUGAAUAUUUAACUAUUGCCUAACCGGUAUACAGUCAGGGAGCCAUGUCUUAGAUCCAUAUGGUUAGCUCUUAUUCUACUGCUCACUUUGCUUCUUGCCAAAGUAGUUUAACGGUGUUUUGGUUUUAGCCCUC

Sequence
(XR_003238244.1):

GCCUUAUCAAUUCUUUGGCAAUUUUCAACAAUGUUUCCUGAUGUUUGGAUUGGUACCCAUAUCUCUUAAUUAGUACAUACCAGACGCGGCCGGGCGCAGCUGGCACAGUGGCAGCGCAGGAGAGUCGAGGCGGCGGCAAGUGGCGACAGGGAGUUUGGUGGUGGCGAUGGAGAGGAGGCCGUGGUGCAGAGGAGGGGCGGCAGCGAAGGGCUCGGGACCGAGGUGGCUCGGUCGAGGCAACGAUGGUAGGAGGUGGUCGCGGAGGCGGUGCCCAUGCUGCCCGUCGGGAUGGGAGGAAGGUUGGUGAUGGGGAUGGGGAGCUCGGCGACGGCAGUGGCAUGGGGGUCGACAGCGAUGGGGAUGGAGAGGUGGCUGGUGGCAGGGAGAGGGGAAGAAUGACGAGGAUGUUGCUCCCGGCGACGGUUUUGCUUGGGCGAUGGCUUCCAGGAGAAGGAGAGGCCGGAGUAGCAUAGUGGCGACGACAGUGGCGGUGACACCAACACGAGAGGAGGGUCGUACAAGGUGAGUCUUCUCGCCGGUCUUCUAUUUUCGGUGUGGACUCGGUUUGCCGUGAGUGUGGUCUCUCUCUCUCACUACUUCGCCGGCUUUUGUGUGAGGGCUUUGGUUGACGGGGAGUAGUGGUGCACGAGCGGCGACUGUUGAUGGCGGUGUUGGAUGUGAUGGACGGCGGCGGUGGGGCUGGACGUCGACAGCGACGGAAGGCUUGCCGGGCUUUAAGAUUUCCGCCCAAAGGACAGCCUUGCUUACACAUCGUUGGAAGCACGAACCAAUAGAGGGCGGCAACCCCCUGAAUACCACAUCAUGUCUGUGAUUCCAUAUCGCCGAGAAGCACAGCAGGUAGAAGACUCUGAAGUGCAAUACUGGCACCACCUGCGAUGGCUUGGGCUGAUGGAGAAUCGUGGGAGUGGAUUUUGGUGGAUGGGGAGUGCACGCGUGCAGGGGAUGAGGUUGAGGAGGGGUCCCAACUGAGCUGAUGGCUGCUGAGGUUUGGUGCAAAAGACUGUGAUGGUUCGGCAGAGGUGGGUGCAAGACACUAUUAGGCUUGUAGGCAUUACAUCGAAUACCGGCGUGCAUGCAUACUUGCCGUUUGGGGGCAGGGAGGAAAUGUGGACUUCGUCUGAGAGGAAAGAGGGAAUGGGCCGGCAUGGGCUAAAAAGGGAGGUCCACUGCAAUGUCUUUGUAAAUUUGCAGGGAAGUAAUAUGCCCGUGCUAAACGUUACGGUCUAAUUGUAUUAUCUUUAAUAACUUUUAAAUUUUCAUGUUAGAAAAAAAUGUGUCUUCUAUGAUAUGUGCAAUUGAGCUUUAACUCAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

310

LEP:

63.01%

ME_num:

168

MEP:

34.15%

HE_num:

13

HEP:

2.64%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.82

Avg Expression:

2.61

Tip: OSA-LNC112936153 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl-2.063886505731990.045092353845562
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-2.350068517826140.0416243618563407
3Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-6.055173701003870.0123087270098748
4Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae1.525465378427328.20568512584079e-08
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-3.621328735564910.021077303624784
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-2.633414031057160.0131676495251353