Chr:
Chr8
Start:
28309737
End:
28317188
Strand:
-
Ref_name:
LOC112936153
Sequence
(XR_003238242.1):
AUGCCUUAUCAAUUCUUUGGCAAUUUUCAACAAUGUUUCCUGAUGUUUGGAUUGGUACCCAUAUCUCUUAAUUAGUACAUACCAGACGCGGCCGGGCGCAGCUGGCACAGUGGCAGCGCAGGAGAGUCGAGGCGGCGGCAAGUGGCGACAGGGAGUUUGGUGGUGGCGAUGGAGAGGAGGCCGUGGUGCAGAGGAGGGGCGGCAGCGAAGGGCUCGGGACCGAGGUGGCUCGGUCGAGGCAACGAUGGUAGGAGGUGGUCGCGGAGGCGGUGCCCAUGCUGCCCGUCGGGAUGGGAGGAAGGUUGGUGAUGGGGAUGGGGAGCUCGGCGACGGCAGUGGCAUGGGGGUCGACAGCGAUGGGGAUGGAGAGGUGGCUGGUGGCAGGGAGAGGGGAAGAAUGACGAGGAUGUUGCUCCCGGCGACGGUUUUGCUUGGGCGAUGGCUUCCAGGAGAAGGAGAGGCCGGAGUAGCAUAGUGGCGACGACAGUGGCGGUGACACCAACACGAGAGGAGGGUCGUACAAGGUGAGUCUUCUCGCCGGUCUUCUAUUUUCGGUGUGGACUCGGUUUGCCGUGAGUGUGGUCUCUCUCUCUCACUACUUCGCCGGCUUUUGUGUGAGGGCUUUGGUUGACGGGGAGUAGUGGUGCACGAGCGGCGACUGUUGAUGGCGGUGUUGGAUGUGAUGGACGGCGGCGGUGGGGCUGGACGUCGACAGCGACGGAAGGCUUGCCGGAUAGAGAUGCCCCUCGGUAAUGAAGGGGAGAAAGGAGAUGCGGCGGCGACAGACUGUCGAUGACGGAGGCCGCAGCGGGACGGGGUGGUGGGAGGCCGGGAUUCGGGAUGUGGUGGAGACUGGCCAGGUGGUCGACGUUGAUCCGGCGGCAUAGGACUCGGUGGCGGCUCGUCCUCCACCGACACCCAGUCACCGUUGGGAUCAGUGGAGGGCGAGCCGGCGGCGGGGAUCGGUGGCAGAUCGGAUCACCACGGAAGGCGUCGGCGGCGACCUGGCCACGAGAGGACUUUGUGCGGCAGGGAUCGGUGGAGCAGAACAGCGUGGAAGGCGUCGGCGGCGACGUGAAUCCGGGCGGAGGACAAGCGAUGGGGAUCGGUGGAGGGCGAGCCGGCGGCGAUGGCAGAUCGGUGAGGCAGAGGACGGCGCCGCGGCUGAUAGGGAGGGGAGCGCUGAUGGCGGAGCGGUUUCCGGCGUCGCGCGUGCGGGAGCGGAAUCUGGGAGAGGCGCGGUGGGAGAGCGAGAGAGAGGGAGACGGGCCGUGCGGUGCCGAGGGAGGGGGCAUACGGCGAUUGAGGGAGGUGGGAGGUGGGAUCGAUCCGCAUCGUUGGGAUUUCACCGAGAUGAUCUGAACCGUUCCAUGAGGAAUGAAAGAAUGAGUGAUGGGUGAAAGUAUUUGUUGAACUAGGUAGAUAGAUAGAUUUAGAUGGGGGAAACAUCAUGUGUAUUUCUAUAUUUAUAUACUAAUAUAAAAAGGAGGAGUUGCCUCCUUGCAAUCCUGUAGGUGAAAUCAAAGAAAACCAGGGCCCACGCAUAGACACAUCGAAUCCCCAUCCCCAUCGCCACGGAUUCCUCUGCCGUCCUCACCCCACUCCCUCUAUCACCGCAUGUCGCUUCCCCCUCAAUCACUCUGACGAUAGCUUCCUCCUCCCCUUGAUCUCGCCCUCGAUGACGCGCCACCUACACACGAUUUCGCCUUCAACAAAUUCACUCGGCCUCUUCCUCCGCUCGAUCUCGCUUGCUGUCUCCUUCACCGCUACAAAGCCUUGUCGCCCGCCUCCAUCGUUCUCUUGUGUCGCCGUCACCAGCAAGACCUUGCACCGCCGCCGUUGUGACCCUCGAUCCACGCCGAGCUUCCGCCUCCAAGGCCACAGCGAUCUCUUCUUCAGUUCUCAACUUACUACCGGGUGAAAGAAGCGAUGUUGCUCUUUCUUUUCUGUAGAUUUGCCUCCUCUGUGUACUAGCCUCAUUCUCCUCAGGUUGCGUAGAGGAGUAAGGGAGAAAUUUCAGAACUAUGUACAAACAUACUCCAAUGAUUUUGCUACCAUAUACCUGUUCAACUAUUUACUAGCCAUCAUCCUUGUCAUAUGCACUAUAUGAGAAAUAAGAGUAUCCAACUCAUCUUCUGGUCAGUGUUCACACACACUUUUUGGUUUUAUUUUUUUACUUCUAUCUAUUCGUUUUUAAUAAUAUGUGUAUUAAAUACAUUUUUACUCAAAUAAAAUAAUUUUAGAACUUCAUUUCAUUAACAGAUCUAAUAUUUGUGUAUGAUGUUUGCAAGGACGAGAAACAAUAUUGAAGGAACUGCAAAUUACUCUCAGAUGAUCUUUACAAGAAUGGAUGAAAAUGAUCACUUAGUGUUGGGUUCCAACAGUAUGAUCCACUUAUACUCUGUAAUCAUGAUGCAUGUUUUCUGACAUGUAUGUCAAGUUUAUGCACUCCAAAUCCUGUCAGUGAACAUCUAGAGAAGCUAUUCAGUUUCAUUGACAAUAAAAAAGAGGUGGACCCGUCGUCAGACAAAUUACAGGGUCCAUUACUCUCCCCCAAUCUCCCCCCGCAACAUUUUCUGGUGGUGAUAUUCUGAGUUCAUGUUUAACCAACAAAUCAAGGCGCUUGCUUGGUCUAGAGUUCCACACCAAUGGUUAUAGUGGUUUUAGCGAUGACCAUGAAUAUUUAACUAUUGCCUAACCGGUAUACAGUCAGGGAGCCAUGUCUUAGAUCCAUAUGGUUAGCUCUUAUUCUACUGCUCACUUUGCUUCUUGCCAAAGUAGUUUAACGGUGUUUUGGUUUUAGCCCUC
Sequence
(XR_003238243.1):
CCUUAUCAAUUCUUUGGCAAUUUUCAACAAUGUUUCCUGAUGUUUGGAUUGGUACCCAUAUCUCUUAAUUAGUACAUACCAGACGCGGCCGGGCGCAGCUGGCACAGUGGCAGCGCAGGAGAGUCGAGGCGGCGGCAAGUGGCGACAGGGAGUUUGGUGGUGGCGAUGGAGAGGAGGCCGUGGUGCAGAGGAGGGGCGGCAGCGAAGGGCUCGGGACCGAGGUGGCUCGGUCGAGGCAACGAUGGUAGGAGGUGGUCGCGGAGGCGGUGCCCAUGCUGCCCGUCGGGAUGGGAGGAAGGUUGGUGAUGGGGAUGGGGAGCUCGGCGACGGCAGUGGCAUGGGGGUCGACAGCGAUGGGGAUGGAGAGGUGGCUGGUGGCAGGGAGAGGGGAAGAAUGACGAGGAUGUUGCUCCCGGCGACGGUUUUGCUUGGGCGAUGGCUUCCAGGAGAAGGAGAGGCCGGAGUAGCAUAGUGGCGACGACAGUGGCGGUGACACCAACACGAGAGGAGGGUCGUACAAGGUGAGUCUUCUCGCCGGUCUUCUAUUUUCGGUGUGGACUCGGUUUGCCGUGAGUGUGGUCUCUCUCUCUCACUACUUCGCCGGCUUUUGUGUGAGGGCUUUGGUUGACGGGGAGUAGUGGUGCACGAGCGGCGACUGUUGAUGGCGGUGUUGGAUGUGAUGGACGGCGGCGGUGGGGCUGGACGUCGACAGCGACGGAAGGCUUGCCGGGUUGCGUAGAGGAGUAAGGGAGAAAUUUCAGAACUAUGUACAAACAUACUCCAAUGAUUUUGCUACCAUAUACCUGUUCAACUAUUUACUAGCCAUCAUCCUUGUCAUAUGCACUAUAUGAGAAAUAAGAGUAUCCAACUCAUCUUCUGGUCAGUGUUCACACACACUUUUUGGUUUUAUUUUUUUACUUCUAUCUAUUCGUUUUUAAUAAUAUGUGUAUUAAAUACAUUUUUACUCAAAUAAAAUAAUUUUAGAACUUCAUUUCAUUAACAGAUCUAAUAUUUGUGUAUGAUGUUUGCAAGGACGAGAAACAAUAUUGAAGGAACUGCAAAUUACUCUCAGAUGAUCUUUACAAGAAUGGAUGAAAAUGAUCACUUAGUGUUGGGUUCCAACAGUAUGAUCCACUUAUACUCUGUAAUCAUGAUGCAUGUUUUCUGACAUGUAUGUCAAGUUUAUGCACUCCAAAUCCUGUCAGUGAACAUCUAGAGAAGCUAUUCAGUUUCAUUGACAAUAAAAAAGAGGUGGACCCGUCGUCAGACAAAUUACAGGGUCCAUUACUCUCCCCCAAUCUCCCCCCGCAACAUUUUCUGGUGGUGAUAUUCUGAGUUCAUGUUUAACCAACAAAUCAAGGCGCUUGCUUGGUCUAGAGUUCCACACCAAUGGUUAUAGUGGUUUUAGCGAUGACCAUGAAUAUUUAACUAUUGCCUAACCGGUAUACAGUCAGGGAGCCAUGUCUUAGAUCCAUAUGGUUAGCUCUUAUUCUACUGCUCACUUUGCUUCUUGCCAAAGUAGUUUAACGGUGUUUUGGUUUUAGCCCUC
Sequence
(XR_003238244.1):
GCCUUAUCAAUUCUUUGGCAAUUUUCAACAAUGUUUCCUGAUGUUUGGAUUGGUACCCAUAUCUCUUAAUUAGUACAUACCAGACGCGGCCGGGCGCAGCUGGCACAGUGGCAGCGCAGGAGAGUCGAGGCGGCGGCAAGUGGCGACAGGGAGUUUGGUGGUGGCGAUGGAGAGGAGGCCGUGGUGCAGAGGAGGGGCGGCAGCGAAGGGCUCGGGACCGAGGUGGCUCGGUCGAGGCAACGAUGGUAGGAGGUGGUCGCGGAGGCGGUGCCCAUGCUGCCCGUCGGGAUGGGAGGAAGGUUGGUGAUGGGGAUGGGGAGCUCGGCGACGGCAGUGGCAUGGGGGUCGACAGCGAUGGGGAUGGAGAGGUGGCUGGUGGCAGGGAGAGGGGAAGAAUGACGAGGAUGUUGCUCCCGGCGACGGUUUUGCUUGGGCGAUGGCUUCCAGGAGAAGGAGAGGCCGGAGUAGCAUAGUGGCGACGACAGUGGCGGUGACACCAACACGAGAGGAGGGUCGUACAAGGUGAGUCUUCUCGCCGGUCUUCUAUUUUCGGUGUGGACUCGGUUUGCCGUGAGUGUGGUCUCUCUCUCUCACUACUUCGCCGGCUUUUGUGUGAGGGCUUUGGUUGACGGGGAGUAGUGGUGCACGAGCGGCGACUGUUGAUGGCGGUGUUGGAUGUGAUGGACGGCGGCGGUGGGGCUGGACGUCGACAGCGACGGAAGGCUUGCCGGGCUUUAAGAUUUCCGCCCAAAGGACAGCCUUGCUUACACAUCGUUGGAAGCACGAACCAAUAGAGGGCGGCAACCCCCUGAAUACCACAUCAUGUCUGUGAUUCCAUAUCGCCGAGAAGCACAGCAGGUAGAAGACUCUGAAGUGCAAUACUGGCACCACCUGCGAUGGCUUGGGCUGAUGGAGAAUCGUGGGAGUGGAUUUUGGUGGAUGGGGAGUGCACGCGUGCAGGGGAUGAGGUUGAGGAGGGGUCCCAACUGAGCUGAUGGCUGCUGAGGUUUGGUGCAAAAGACUGUGAUGGUUCGGCAGAGGUGGGUGCAAGACACUAUUAGGCUUGUAGGCAUUACAUCGAAUACCGGCGUGCAUGCAUACUUGCCGUUUGGGGGCAGGGAGGAAAUGUGGACUUCGUCUGAGAGGAAAGAGGGAAUGGGCCGGCAUGGGCUAAAAAGGGAGGUCCACUGCAAUGUCUUUGUAAAUUUGCAGGGAAGUAAUAUGCCCGUGCUAAACGUUACGGUCUAAUUGUAUUAUCUUUAAUAACUUUUAAAUUUUCAUGUUAGAAAAAAAUGUGUCUUCUAUGAUAUGUGCAAUUGAGCUUUAACUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
63.01%
ME_num:
MEP:
34.15%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.82
Avg Expression:
2.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -2.06388650573199 | 0.045092353845562 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.35006851782614 | 0.0416243618563407 |
3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -6.05517370100387 | 0.0123087270098748 |
4 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.52546537842732 | 8.20568512584079e-08 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.62132873556491 | 0.021077303624784 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.63341403105716 | 0.0131676495251353 |