Chr:
Chr4
Start:
4750839
End:
4757694
Strand:
+
Ref_name:
LOC112936051
Sequence
(XR_003241892.1):
UAGCCAUAUUUCACACUCGUUGCACUCUGAACAAUCAAUAGAGAAUCACUUCUAGCAAUCUAUUAUGAUUCAUUUCCAGAUGCAUUAAUCUAUUCUCUUUGUUAGUACUUUUCUUGGUAUUUUAGGUUUUCUUGGGGCUUAGUUAUAGAAUAGGGUUUUGGAGUGGGUUUGUGGAGGGGUGAUUAGAAAGUUGAAACUCUUUUGCCGCGAAUAAAUCUGCAGUAACAUGCCUAUCAUUUCACUUCAGAGCCAAUGCAUUUGGGUAAUGUCUCAAAAUUUGUUUUGUAUUUGGUUGUUUCGGCUUUUUUGGUUGAAGGAAUCUGCAAUAUAUCAUGCUUCCCCAAUGAUGUUGUGCCUGAGGAUCAUUUAAACGACUCUGAUCAAUCCUCCACCAUAGCUGGUUGUUCUACUUGCUGUGACCAUGCCAUGACAUCCGAAAACACAGAGGACCAGGUUUGACACCUUUGGAUUGCAUACCAGAAUUUUCCAUGUUCUUCAGCUCUCAAUAACUCAUCUUCAGAGGAGAAAGGGAAGUGAGGAAAAUUUGUAAGUGAAGAAUUUGACAGAUUGCGAUGGGCACCAGUUAUGCUGGUAAUUUUCUUGAACCUGACACUAAUUUCAGGUUUCUCAGGGUCCAGGAGUUGAAGCCAUGCAAACAUGCAUCAUGCUAAUGUCGUCCUGAGCUUCCAGAUUAGGCCCUGCUGUAUUGAUCAAUAUAUUCAGCAUGAUGACAGCAUUAUUUCUAUACAUGGGGAUAUUGUGUAUCCGGAUAAGAAUAGCAUUAUUUGUAGGCUGGAGGCUAUAGAAAAAUAUUUCAGCCUUGAAAUAGUCAAGGACAUUGUGGAAGCCAUGGAAAGUGAAGCAUCUAAGUUAGAUGAGGAUUGUUGUACCUUGGCCAUGAAAUGAUUGAGAGAGCCCUAUCCAGUUCUGUUGAGAGCCUCACAGUGUUUGAUGAAUUGCAAGCUACAAAUGCUUUGCUGUAGAUAUGAAUUGCAAGCUUACAGAAAAGGUUGUGCACUGUGGGCUAAAAAGUCCCAUUAACCAGGAAGCUUGAAGGAUACUAAUAUUAGAAAUUCCACAAAUGACACAAUAGAUAUGCUACAACUUUGGCUCUACUUACACUACCUGUAUAUGACUACAAAACUGCAGCUGUGAGAAGAUAGAAUGGCAUCACUUCAAGGGAUGUGAUGCGAUGCUGAAUCUAAUAUUGGAAAGUCGAGCCCUUUGUUCUUCAAUUGCCCUAUUUGCAAAGAUUAUGACCUUUCAAUUUGUCAUCAAUUAUUUAUGACACCAAUGCAUUCUCUUGGUGUAUGCACCAAAGCAAUUUGUACGCGGAAUUACUUAUAUUUUUUAUAUAAUGAAAGCAUUGUGUUCAUGUUUGAAUUAAAAGUCUAACAAACUGAGGUUUUAGUAGGGGAUGCUUUGCAUUGAUAAUAAAGUGCCCAUUACUUUGUAGUUACAUGGGAUAUUUGUUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.24%
ME_num:
MEP:
5.49%
HE_num:
HEP:
92.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.58
Avg Expression:
32.70
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.01487072870558 | 0.0146406717569609 |
| 2 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.01494900579709 | 0.0149774316125519 |
| 3 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.01506243667617 | 0.0146759282838185 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.68379871326174 | 4.86943013358532e-06 |