Chr:
Chr11
Start:
730790
End:
732626
Strand:
-
Ref_name:
LOC112935990
Sequence
(XR_003239378.1):
UAAUCUCUCUUUCUUGCUUCCUUCUGAUGGAUCCUUGCUAGUAGUAGUAUUACUCCGAGCAUGUUUAAUUUGGUUGCUACCUGAGAGAAGCAUGCCUGGACUUAUGUCCUGUUUGAAUCCAGGGACUAAAUCACAUAGAAUGUUUGAUAUUAAUUAGAAGUAUUAAACGUAGACUAAUGACAAAACCUAUUCUAUAAUCUUAGACUAAUUCGCGAGAUAAAUCUAUUGAGCCUAAUUAAUUCAUGAUUAGCCUAUGUGAAGCUACCGUAAAAAUAUGCUAAUUAUGGAUUAAUUAGGCUUAUAAAAUUUGUAUCGCAAAUUAACUCUCAUUUAUGUAAUUUGUUUUAUUAUUAAUUUAUAUUUAAUACUUCUAGUUAGUGUCAAAUAUAGUCCUUGUCACAUCGGAUGUUUAGACGCUAAUUUCGAGUAUUAAAUAUAGACUAAUUAGAAAACUAAUUGCAUAAAUGAGAGCUAAUUCACGAGAUAAAUUUUUUAAGCCUAAUUAAUCUAUAAUUAGCACAUAUUUAAUGCUAGCAUCACAUAGACUAUAAUCAUGGAUUAAUUAGGCCUAAAAAUUCGUCUCAUGAAUUAGGUCUUAUUUAUGCAAUUAGUUUUGUAAUUAGUCUAUGUUUAAUACUCUAAAAUAGCAUCUAAACAUCUAAUGUGAUAGGGACUAAAGUUUUAGGCUGUGUUUAGAUCCAGGGGUGAAAAGUUUUACCGUGUUACAUCGAAUAUACGGACAUACAUUUGAAGUAUUAAACGUAGUCUAAUAACAAAACAAAUUACAGAUUUCGCCUGUAAAUUGCGAGACGAAUUUAUUAAACCUAACUAAUUCAUCAUUAGAAAAUAUUUACUGUAACACCAUAUUAUUAAAUCAUGGAGUAAUUAGGCUUAAAAGAUUUGUGUCGAUCUUGAUUGGUUGCUACCCAAGACUGUUCUCCACUGGCCUGGCCUGACGCAUACUCCAGCCAUAGAGGCGUGCAAUUAGCGCGGCCGAUUUCUGUCGCCCGAGGCUCCAGGCGUAAACAAAUGCGUGCUUUACCAUCGAAAUCUCAACUGUACGAAGUCAUCACCGCGUGCCGCCAUCGCACGAGGCUGCCCCUGAUCUGACGCCACUGCGUGAAGCCCACACCUACCUCAAUCGCCACCGCCGGCAAGCGAAGCCACUGCCGUGGUCGUCGUUGAGCGAAGUCCCCGCGUUGGUCGAGUUUGUACGAAGCUUCGCGUGAUCCCCUUUGCCGGAUCCAGCUUAGAGCGAAGCUUCAAUUCAGCUGAUGCUGCUGAUUUUGCUGAUCGUUAUUGCGACUUUGGGGAUAUUUUUGGAAAGUUAGUAAUCAUCUACUCGAUCAGGCAGCAGCAGCAAACCAAACAAGCAACUCGUCAGGUGGAACCCAUGAGUUUGUUGGAGUGCAAAUUCUUCAGGCGUGGUGCUCAGGUCACCAACCAAACAGGCCUUCUGUCUUUCGUCCGUCUUGAGGGAUAUCAAGAAAAGACAUUCUCAUGGUUCUAAAAAAAAGGGAUAUCAAGAACUCAAAAAGACUUUCUCAUGAAUGAAUGUAUCUAAUUCCAUCUGAAACUCUGGUGGUAGCUUCAUACCCACUUCGGACUUUGCACUAGCUUGUACAUUUAGAGAAAUUCUGAAAGUAGUAUGUGAAGGUUGUUGAAAUAUGCUUAUAUACAAAACAUGACCAUACAUGUACUGGUAAUUACAAGAUUUCAAUGCCCAAUUAGUUGCAUUUUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.31%
ME_num:
MEP:
51.63%
HE_num:
HEP:
28.86%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.68
Avg Expression:
8.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.87849048147534 | 0.00777196304205072 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.10362015986637 | 1.19492282799162e-12 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.74360947752132 | 2.23580625478731e-20 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.79789023385677 | 1.31989319676906e-22 |
| 5 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.49457008293498 | 0.010894218094139 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -1.90247709158905 | 0.011398277979081 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.73424914236087 | 0.00898105839680439 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.41343243733423 | 2.20723965181265e-09 |
| 9 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -1.48038160716991 | 0.0279705972244298 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.81516227882856 | 1.32179216831319e-05 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.76680810001002 | 3.1468242431696e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.70676262801877 | 3.04745414746907e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.01819137561563 | 3.68752208209691e-25 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.93346519019487 | 5.83318424886609e-05 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.61782396326998 | 6.946434075772e-05 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.38597390675085 | 0.00251988283327214 |
| 17 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.53575102676296 | 0.0415117562971074 |
| 18 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.53581347279721 | 0.0420323218395813 |
| 19 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.53596773562222 | 0.0415887808473644 |
| 20 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.85232264551431 | 4.02624157335957e-68 |
| 21 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.00195291123076 | 3.19441763775008e-21 |
| 22 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.29475777407499 | 5.68835491183911e-20 |
| 23 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -2.27172449461152 | 1.23127818277467e-11 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.84034733126495 | 1.83594901858405e-11 |
| 25 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.97145818791054 | 2.40481469022212e-21 |
| 26 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.43574655615693 | 5.06959108556168e-11 |