Chr:
Chr9
Start:
18000932
End:
18002506
Strand:
+
Ref_name:
LOC107282082
Sequence
(XR_001548574.2):
UGUAACUGACACGUGGGCCCUAUAGUUUUUAUUAUUUUUCUAGACUAAAUUGUCACGUCAACGCCACGUGGGAUAAAGACCCAGUCAAACAAGUUACGUAGGCACCACGUUAGCCAAAACCAUCAUCCAAACCGUCCUAAGACCUCGUGCGCUUUAGUUUUAUAAGUUAAGGGAUGCAUUGCAUCCGGUUUUUGUGGUUCAGGGUGUUUUUGAAAACUCGACGACAAGAUAAGGGACGUAAAGUGUACUUUUGCAUAGUUAAAUGCCCAUCGCAGCUUAUAAUUCUACAACGAGUGGGCUGGCCCACAUUGAGCCCAACCGGUGCCACCAUCGACGACCUCCGCCUCUCGCCCAGCCGCCCUCAUCGCUUUCCGGUCGCCGUCGCUCCGAAACCCCAUGAACCUUUCCCCCCCUCCCUUCGCGCCGCCGCCACCCCUAUCCGCGCCAUCACCGGGAGUGAGAAAGGCGACAGCUGCAGCAGGAGCAGACCGCGCGAGAGAGCGAGAGGGAGGAAGGUAUGGGAAGCGGCAGGAAGCGAGGGCGCACUGUCAGGAGCCGGCCAGAUGAAAGGUCCUGAACGCAGCGCCGCCACUUCAAGCAGGGGCGCGAGAACAUCUUGAAGCACAAACCCCAGCGCCCUCCUGUGGCGAAGGAGCCGAAGGAAGCGGUGAUGGGUGCAGGGGAACCCCUCGUGGUAGCCCUUCACCACCGAGAACCCGGCUUGGAGGACUACUUACAAGAUUUACCUUAUGGUAAUAGAAGCCUAAAGCUGGGACGCACUGAAUCGAUUUACGGGUGGGGGCAUUCGGCGGUUGACAGAGUAAACAGGGCAGCGGCACAGCAGGGUAGCUUAGACAGCUUGGACAAGGCAGAGUUUGGUGUGGUGAAGUGGUUUAGAUGACUACGGGAACGGGCUGGCAGAAGCAGAACCUGGGGAAAAUCCCUGGAAAAGCUGGAAUUGGAAGGUAGCUACUGAAAGUCUGAAAUUUAUACCUACUUCUCGGUCCUGUUCGUAGAAUUCAGAUUUCAGAAGCUGGGAGAGUGGGAGGUUGAUACCGAUGGGCCAGUGUGCCACUGUGCGCGAUGUGCACUAGCUGUAUGAUAUGCGUGCGUCCUUGUUGUGCUGGACCGAUAAACACACAAAGUGUAGUGCAAUGUCACCAAUUGUGAGCAAGCCAGGCAUGCUUGUAUGUAAGGAAUGCUGAAAAAAGCACUCAUGGACUAGCUGUACAUGCAGUAUGCAUGUUUCUAUGACCACUAAGAUGUGAUUUGAAAUAUAGUGAUAACCAAUAAUCAAUGACAAUUCUUCUCGACACUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
6.3%
ME_num:
MEP:
91.87%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.70
Avg Expression:
4.77
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 1.46238023965129 | 0.0356301671814687 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.46190861758824 | 0.0109939326019736 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 1.4655942340293 | 0.00848940445606414 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.5633170492154 | 0.0017899839079667 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.62908454501326 | 0.0010294432090706 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.04554842345969 | 0.0420281184928317 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.39226682457177 | 0.00123935644248161 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.26100436603891 | 0.000375130287631896 |