Chr:
Chr8
Start:
15335866
End:
15342671
Strand:
+
Ref_name:
LOC107282077
Sequence
(XR_001548478.2):
UUCCUCUCGCAUCGUCGCCAUUUCACCACUUCCCGUCGCCAUUCCCCCCCAUCCCCGCUUCCGCCGCCGUCCAUCUCCCUCGCCGCCUCCGUCGCCUGUCCUGGCGUCUCCUCCCCCUCCAGCGCCGUCGCCUUCUCUGCUCCCUCGCCGCACUCGCCCUUCCUCGCCGCCUUCUCCACCGCCAGCGCCCCUCUGUCGACGUCCGCCUCCCCCGAUAUUGGCGGCUUCCCUCCGUCGAAGCCCUUCCUUGUCGCCCUCGCCGCCUUCGCCUCCGCCCGCGUCUCCGCGCCGGCUUGUGAGCCCCCACCGUCGCUGUCCUCCUCCCCCGCCCUCUUGUCUAGCGAGUCGCGUGACGUAGCCGCCCCUCCACCCGCCUCCGCCGGCGCGCGAUGAGUCCUCUUCGCCGCGUCGCCUCCCCGCGCCACCACCGCCACGUUCUCCUCCCCAUGGACCGACGCACCCUUCUCCACUCCACCUCUGUCGCCAUCGACCUAGCCGCCCCCUUCUCUGAAGUGUGAACAUGCCCUUGGCAACCGAUUUAACCCAGUUGUUCAGAUACUAUGCGAGGAAUCGAGAGGAGACAGCCGAGCUUCAGGGUCAGUUUGCAAGACGGUGGCAUGCGCGAAGGGGAUCCGUAUGCCGGCGAAGGGGUUAUCGGUGUUCAGGUGCGACAUUGUAGCAUACGCACGUCGGUGACGUCGAUAGCUGACUGCGCUGAGUCAUCCCGAAGCGAUUCAGUGAGGUUGAGGAGUUUGAGGGGAGCAACAUGAGUGAGGUCUUCGAGGGCAACAUAGUACUGUCAGGGCGUCGCCAGUGCCAUUGUCAGCUUCCCGCCACAAACGCCUCUGGAUCUCAAAUCCACCACGUCGAAGCAGGGGUUGGUCAGGCCGGCAGACCAUCUACGGCUGCGCCUAACACUCCCCGCAGGUACAUUGCUUCAUCCCAUUGCUCCCAUAGGCUUUUAGUUUUUUUUUUUUUUGGCAAAAAGUCGAGACAAAAAGUUAUAUGCCCUAAUGGCAUGUGGAUGUCAUGUAAUUACUAAAUUUUUAGCAUGCUGAAUAUAUAACAUGGAUAUGUUGCUUUGGAUUAAUAUCACUGUCUUCUCAAAAAUUAGGUGCCAUUCUGUUCGUUUUUUGUAUGGAGUAUGACAAGUAUAUAAAAUAGUUGUAUGGAGUAGGACAGGUAUAUAAAUUAGGUGCCAUUCUCUUUUUUUUUAUGGAGUUGUACAAGUAUAUUUUUUGGGAUAUCUUGCCGUGCUGUGUACUCUGUGUGGCUGCUACAUCCUCUAUACAAUUGCUCCAGAGACUAGCCAGAGCUUAAAAGAGGCACACAGUAAAAUCAGGGGAGAGACUAUAUUCGUUAAUAAUCUAAUCAUAUGUGCUGUAAUUAUCGUUGCGCCUUAGACCUAUUGCAACUUUGGCUUGAGGAGUCUAAGAUUUCGACAACUGAUGUAUACAAGAGCUGAAAGUGAAUGUUGUAUGUAAAAAGACGUACCCGUUUUUUCUUAUGUUGGCUUGUGCCCGUCGUCGCUGCA
Sequence
(XR_001548479.2):
CCGAUUCCUCUCGCAUCGUCGCCAUUUCACCACUUCCCGUCGCCAUUCCCCCCCAUCCCCGCUUCCGCCGCCGUCCAUCUCCCUCGCCGCCUCCGUCGCCUGUCCUGGCGUCUCCUCCCCCUCCAGCGCCGUCGCCUUCUCUGCUCCCUCGCCGCACUCGCCCUUCCUCGCCGCCUUCUCCACCGCCAGCGCCCCUCUGUCGACGUCCGCCUCCCCCGAUAUUGGCGGCUUCCCUCCGUCGAAGCCCUUCCUUGUCGCCCUCGCCGCCUUCGCCUCCGCCCGCGUCUCCGCGCCGGCUUGUGAGCCCCCACCGUCGCUGUCCUCCUCCCCCGCCCUCUUGUCUAGCGAGUCGCGUGACGUAGCCGCCCCUCCACCCGCCUCCGCCGGCGCGCGAUGAGUCCUCUUCGCCGCGUCGCCUCCCCGCGCCACCACCGCCACGUUCUCCUCCCCAUGGACCGACGCACCCUUCUCCACUCCACCUCUGUCGCCAUCGACCUAGCCGCCCCCUUCUCUGAAGUGUGAACAUGCCCUUGGCAACCGAUUUAACCCAGUUGUUCAGAUACUAUGCGAGGAAUCGAGAGGAGACAGCCGAGCUUCAGGGUCAGUUUGCAAGACGGUGGCAUGCGCGAAGGGGAUCCGUAUGCCGGCGAAGGGGUUAUCGGUGUUCAGGUGCGACAUUGUAGCAUACGCACGUCGGUGACGUCGAUAGCUGACUGCGCUGAGUCAUCCCGAAGCGUUGAACAAUUCUGGUUUAUUGAUUUUUGGUGCCUCAAAUAUGUCAUCUCUUUUUGAUGGCAGUCCAAGCAAACAAUCAACAUCAUCGAGUGUCAUCGUUACGAAAGUACCAUUAAUAUUGAAUGCUUUCUUCUCCUUGUCAUAGCUUCUUGCAAUCUCAUUGCACAAGUUUCGGUCAAUAUGUAUGUUGUCAAUCUUUAGCAAGUUGCCAAGACCUGAACCCUCGAUAGCUUCCUUUUGACGUAGACUUAGAUGGAGUAUUACCUCGUACAUGGCAUGUGGAGAGCAAACUAGAGUUCCCUAAUUAACAGAAAAGAUAAUAAGAGUUUAGUCCAUGUGAAAAUUUAUGCAAGUGCUCAUAUAUAUGAUUGCACAUUACCAAACCUAGAGAUCAAUUAAUCCUGCUAGAAAUCAAUUAGAAAUCAAAGGAAAUAAUUAAUCCUGCUCUGGCAUGUUACUCGUCUGACAUGUUGAAGUGAUGUCCUCCAUCACUGUUCUGGCAGUCUAUAUGGCCCUCUCUAUAAUUUGUUCAAUGUUCAUUCUUAUGUGCAGGAUUCAGUGAGGUUGAGGAGUUUGAGGGGAGCAACAUGAGUGAGGUCUUCGAGGGCAACAUAGUACUGUCAGGGCGUCGCCAGUGCCAUUGUCAGCUUCCCGCCACAAACGCCUCUGGAUCUCAAAUCCACCACGUCGAAGCAGGGGUUGGUCAGGCCGGCAGACCAUCUACGGCUGCGCCUAACACUCCCCGCAGGUACAUUGCUUCAUCCCAUUGCUCCCAUAGGCUUUUAGUUUUUUUUUUUUUUGGCAAAAAGUCGAGACAAAAAGUUAUAUGCCCUAAUGGCAUGUGGAUGUCAUGUAAUUACUAAAUUUUUAGCAUGCUGAAUAUAUAACAUGGAUAUGUUGCUUUGGAUUAAUAUCACUGUCUUCUCAAAAAUUAGGUGCCAUUCUGUUCGUUUUUUGUAUGGAGUAUGACAAGUAUAUAAAAUAGUUGUAUGGAGUAGGACAGGUAUAUAAAUUAGGUGCCAUUCUCUUUUUUUUUAUGGAGUUGUACAAGUAUAUUUUUUGGGAUAUCUUGCCGUGCUGUGUACUCUGUGUGGCUGCUACAUCCUCUAUACAAUUGCUCCAGAGACUAGCCAGAGCUUAAAAGAGGCACACAGUAAAAUCAGGGGAGAGACUAUAUUCGUUAAUAAUCUAAUCAUAUGUGCUGUAAUUAUCGUUGCGCCUUAGACCUAUUGCAACUUUGGCUUGAGGAGUCUAAGAUUUCGACAACUGAUGUAUACAAGAGCUGAAAGUGAAUGUUGUAUGUAAAAAGACGUACCCGUUUUUUCUUAUGUUGGCUUGUGCCCGUCGUCGCUGCA
Sequence
(XR_001548480.2):
CCGAUUCCUCUCGCAUCGUCGCCAUUUCACCACUUCCCGUCGCCAUUCCCCCCCAUCCCCGCUUCCGCCGCCGUCCAUCUCCCUCGCCGCCUCCGUCGCCUGUCCUGGCGUCUCCUCCCCCUCCAGCGCCGUCGCCUUCUCUGCUCCCUCGCCGCACUCGCCCUUCCUCGCCGCCUUCUCCACCGCCAGCGCCCCUCUGUCGACGUCCGCCUCCCCCGAUAUUGGCGGCUUCCCUCCGUCGAAGCCCUUCCUUGUCGCCCUCGCCGCCUUCGCCUCCGCCCGCGUCUCCGCGCCGGCUUGUGAGCCCCCACCGUCGCUGUCCUCCUCCCCCGCCCUCUUGUCUAGCGAGUCGCGUGACGUAGCCGCCCCUCCACCCGCCUCCGCCGGCGCGCGAUGAGUCCUCUUCGCCGCGUCGCCUCCCCGCGCCACCACCGCCACGUUCUCCUCCCCAUGGACCGACGCACCCUUCUCCACUCCACCUCUGUCGCCAUCGACCUAGCCGCCCCCUUCUCUGAAGUGUGAACAUGCCCUUGGCAACCGAUUUAACCCAGUUGUUCAGAUACUAUGCGAGGAAUCGAGAGGAGACAGCCGAGCUUCAGGGUCAGUUUGCAAGACGGUGGCAUGCGCGAAGGGGAUCCGUAUGCCGGCGAAGGGGUUAUCGGUGUUCAGGUGCGACAUUGUAGCAUACGCACGUCGGUGACGUCGAUAGCUGACUGCGCUGAGUCAUCCCGAAGCGUAAGGUUGAACAAUUCUGGUUUAUUGAUUUUUGGUGCCUCAAAUAUGUCAUCUCUUUUUGAUGGCAGUCCAAGCAAACAAUCAACAUCAUCGAGUGUCAUCGUUACGAAAGUACCAUUAAUAUUGAAUGCUUUCUUCUCCUUGUCAUAGCUUCUUGCAAUCUCAUUGCACAAGUUUCGGUCAAUAUGUAUGUUGUCAAUCUUUAGCAAGUUGCCAAGACCUGAACCCUCGAUAGCUUCCUUUUGACGUAGACUUAGAUGGAGUAUUACCUCGUACAUGGCAUGUGGAGAGCAAACUAGAGUUCCCUAAUUAACAGAAAAGAUAAUAAGAGUUUAGUCCAUGUGAAAAUUUAUGCAAGUGCUCAUAUAUAUGAUUGCACAUUACCAAACCUAGAGAUCAAUUAAUCCUGCUAGAAAUCAAUUAGAAAUCAAAGGAAAUAAUUAAUCCUGCUCUGGCAUGUUACUCGUCUGACAUGUUGAAGUGAUGUCCUCCAUCACUGUUCUGGCAGUCUAUAUGGCCCUCUCUAUAAUUUGUUCAAUGUUCAUUCUUAUGUGCAGGAUUCAGUGAGGUUGAGGAGUUUGAGGGGAGCAACAUGAGUGAGGUCUUCGAGGGCAACAUAGUACUGUCAGGGCGUCGCCAGUGCCAUUGUCAGCUUCCCGCCACAAACGCCUCUGGAUCUCAAAUCCACCACGUCGAAGCAGGGGUUGGUCAGGCCGGCAGACCAUCUACGGCUGCGCCUAACACUCCCCGCAGGUACAUUGCUUCAUCCCAUUGCUCCCAUAGGCUUUUAGUUUUUUUUUUUUUUGGCAAAAAGUCGAGACAAAAAGUUAUAUGCCCUAAUGGCAUGUGGAUGUCAUGUAAUUACUAAAUUUUUAGCAUGCUGAAUAUAUAACAUGGAUAUGUUGCUUUGGAUUAAUAUCACUGUCUUCUCAAAAAUUAGGUGCCAUUCUGUUCGUUUUUUGUAUGGAGUAUGACAAGUAUAUAAAAUAGUUGUAUGGAGUAGGACAGGUAUAUAAAUUAGGUGCCAUUCUCUUUUUUUUUAUGGAGUUGUACAAGUAUAUUUUUUGGGAUAUCUUGCCGUGCUGUGUACUCUGUGUGGCUGCUACAUCCUCUAUACAAUUGCUCCAGAGACUAGCCAGAGCUUAAAAGAGGCACACAGUAAAAUCAGGGGAGAGACUAUAUUCGUUAAUAAUCUAAUCAUAUGUGCUGUAAUUAUCGUUGCGCCUUAGACCUAUUGCAACUUUGGCUUGAGGAGUCUAAGAUUUCGACAACUGAUGUAUACAAGAGCUGAAAGUGAAUGUUGUAUGUAAAAAGACGUACCCGUUUUUUCUUAUGUUGGCUUGUGCCCGUCGUCGCUGCA
Sequence
(XR_001548481.2):
AUUCCUCUCGCAUCGUCGCCAUUUCACCACUUCCCGUCGCCAUUCCCCCCCAUCCCCGCUUCCGCCGCCGUCCAUCUCCCUCGCCGCCUCCGUCGCCUGUCCUGGCGUCUCCUCCCCCUCCAGCGCCGUCGCCUUCUCUGCUCCCUCGCCGCACUCGCCCUUCCUCGCCGCCUUCUCCACCGCCAGCGCCCCUCUGUCGACGUCCGCCUCCCCCGAUAUUGGCGGCUUCCCUCCGUCGAAGCCCUUCCUUGUCGCCCUCGCCGCCUUCGCCUCCGCCCGCGUCUCCGCGCCGGCUUGUGAGCCCCCACCGUCGCUGUCCUCCUCCCCCGCCCUCUUGUCUAGCGAGUCGCGUGACGUAGCCGCCCCUCCACCCGCCUCCGCCGGCGCGCGAUGAGUCCUCUUCGCCGCGUCGCCUCCCCGCGCCACCACCGCCACGUUCUCCUCCCCAUGGACCGACGCACCCUUCUCCACUCCACCUCUGUCGCCAUCGACCUAGCCGCCCCCUUCUCUGAAGUGUGAACAUGCCCUUGGCAACCGAUUUAACCCAGUUGUUCAGAUACUAUGCGAGGAAUCGAGAGGAGACAGCCGAGCUUCAGGGUCAGUUUGCAAGACGGUGGCAUGCGCGAAGGGGAUCCGUAUGCCGGCGAAGGGGUUAUCGGUGUUCAGGUGCGACAUUGUAGCAUACGCACGUCGGUGACGUCGAUAGCUGACUGCGCUGAGUCAUCCCGAAGCGUAAGGAUUCAGUGAGGUUGAGGAGUUUGAGGGGAGCAACAUGAGUGAGGUCUUCGAGGGCAACAUAGUACUGUCAGGGCGUCGCCAGUGCCAUUGUCAGCUUCCCGCCACAAACGCCUCUGGAUCUCAAAUCCACCACGUCGAAGCAGGGGUUGGUCAGGCCGGCAGACCAUCUACGGCUGCGCCUAACACUCCCCGCAGGUACAUUGCUUCAUCCCAUUGCUCCCAUAGGCUUUUAGUUUUUUUUUUUUUUGGCAAAAAGUCGAGACAAAAAGUUAUAUGCCCUAAUGGCAUGUGGAUGUCAUGUAAUUACUAAAUUUUUAGCAUGCUGAAUAUAUAACAUGGAUAUGUUGCUUUGGAUUAAUAUCACUGUCUUCUCAAAAAUUAGGUGCCAUUCUGUUCGUUUUUUGUAUGGAGUAUGACAAGUAUAUAAAAUAGUUGUAUGGAGUAGGACAGGUAUAUAAAUUAGGUGCCAUUCUCUUUUUUUUUAUGGAGUUGUACAAGUAUAUUUUUUGGGAUAUCUUGCCGUGCUGUGUACUCUGUGUGGCUGCUACAUCCUCUAUACAAUUGCUCCAGAGACUAGCCAGAGCUUAAAAGAGGCACACAGUAAAAUCAGGGGAGAGACUAUAUUCGUUAAUAAUCUAAUCAUAUGUGCUGUAAUUAUCGUUGCGCCUUAGACCUAUUGCAACUUUGGCUUGAGGAGUCUAAGAUUUCGACAACUGAUGUAUACAAGAGCUGAAAGUGAAUGUUGUAUGUAAAAAGACGUACCCGUUUUUUCUUAUGUUGGCUUGUGCCCGUCGUCGCUGCA
Sequence
(XR_001548482.2):
CGAUUCCUCUCGCAUCGUCGCCAUUUCACCACUUCCCGUCGCCAUUCCCCCCCAUCCCCGCUUCCGCCGCCGUCCAUCUCCCUCGCCGCCUCCGUCGCCUGUCCUGGCGUCUCCUCCCCCUCCAGCGCCGUCGCCUUCUCUGCUCCCUCGCCGCACUCGCCCUUCCUCGCCGCCUUCUCCACCGCCAGCGCCCCUCUGUCGACGUCCGCCUCCCCCGAUAUUGGCGGCUUCCCUCCGUCGAAGCCCUUCCUUGUCGCCCUCGCCGCCUUCGCCUCCGCCCGCGUCUCCGCGCCGGCUUGUGAGCCCCCACCGUCGCUGUCCUCCUCCCCCGCCCUCUUGUCUAGCGAGUCGCGUGACGUAGCCGCCCCUCCACCCGCCUCCGCCGGCGCGCGAUGAGUCCUCUUCGCCGCGUCGCCUCCCCGCGCCACCACCGCCACGUUCUCCUCCCCAUGGACCGACGCACCCUUCUCCACUCCACCUCUGUCGCCAUCGACCUAGCCGCCCCCUUCUCUGAAGUGUGAACAUGCCCUUGGCAACCGAUUUAACCCAGUUGUUCAGAUACUAUGCGAGGAAUCGAGAGGAGACAGCCGAGCUUCAGGGUCAGUUUGCAAGACGGUGGCAUGCGCGAAGGGGAUCCGUAUGCCGGCGAAGGGGUUAUCGGUGUUCAGGUGCGACAUUGUAGCAUACGCACGUCGGUGACGUCGAUAGCUGACUGCGCUGAGUCAUCCCGAAGCGUUGAACAAUUCUGGUUUAUUGAUUUUUGGUGCCUCAAAUAUGUCAUCUCUUUUUGAUGGCAGUCCAAGCAAACAAUCAACAUCAUCGAGUGUCAUCGUUACGAAAGAUUCAGUGAGGUUGAGGAGUUUGAGGGGAGCAACAUGAGUGAGGUCUUCGAGGGCAACAUAGUACUGUCAGGGCGUCGCCAGUGCCAUUGUCAGCUUCCCGCCACAAACGCCUCUGGAUCUCAAAUCCACCACGUCGAAGCAGGGGUUGGUCAGGCCGGCAGACCAUCUACGGCUGCGCCUAACACUCCCCGCAGGUACAUUGCUUCAUCCCAUUGCUCCCAUAGGCUUUUAGUUUUUUUUUUUUUUGGCAAAAAGUCGAGACAAAAAGUUAUAUGCCCUAAUGGCAUGUGGAUGUCAUGUAAUUACUAAAUUUUUAGCAUGCUGAAUAUAUAACAUGGAUAUGUUGCUUUGGAUUAAUAUCACUGUCUUCUCAAAAAUUAGGUGCCAUUCUGUUCGUUUUUUGUAUGGAGUAUGACAAGUAUAUAAAAUAGUUGUAUGGAGUAGGACAGGUAUAUAAAUUAGGUGCCAUUCUCUUUUUUUUUAUGGAGUUGUACAAGUAUAUUUUUUGGGAUAUCUUGCCGUGCUGUGUACUCUGUGUGGCUGCUACAUCCUCUAUACAAUUGCUCCAGAGACUAGCCAGAGCUUAAAAGAGGCACACAGUAAAAUCAGGGGAGAGACUAUAUUCGUUAAUAAUCUAAUCAUAUGUGCUGUAAUUAUCGUUGCGCCUUAGACCUAUUGCAACUUUGGCUUGAGGAGUCUAAGAUUUCGACAACUGAUGUAUACAAGAGCUGAAAGUGAAUGUUGUAUGUAAAAAGACGUACCCGUUUUUUCUUAUGUUGGCUUGUGCCCGUCGUCGCUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.82%
ME_num:
MEP:
8.13%
HE_num:
HEP:
52.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.74
Avg Expression:
23.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -10.9962438850044 | 2.54227124997688e-16 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.20621027746257 | 0.0174675555957886 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.39932928411181 | 0.0251071473369373 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.56650711681743 | 0.0197344539133961 |
| 5 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.25553634878092 | 0.00155618667032897 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.10952815969414 | 2.61619311090033e-07 |
| 7 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -8.86984434752222 | 4.55298843051389e-08 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.97452160492438 | 0.00540792715722534 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.07687098410608 | 1.3324294443685e-09 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.5949913298605 | 0.00116103146605937 |