RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107282065

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

27606861

End:

27611088

Strand:

-

Ref_name:

LOC107282065

Sequence
(XR_003243752.1):

GUCUGCCACUGCUCCUCCUGCUGCUCUAGUUCCAUUUGGUAUUCCUCCUCCACUCUGUUCAUAUCCUUCAGCACCUGCUUCCAAGAUUGGCGGUUGGAGAUUGUAUCCCACCACCUCUGCACAUUCUUCCUUGAGUCAUACAGGAAAGGCCAGGUGGCAAAACAAUGCCCGGCUCGGAGGAUCAAACGCAUGCUCCUCAUGACGGAGCCAUUGUUCAAUGGAAGCCCUCUCCAGAACAUCCUUUCCCAGCAGGAAAGGAUACCCACGCUGUUCAUAGGUUUCUGCUAUGUAGCGGCAAAUUGCUCUUGAUUCUGCAGGUUUAAAAUUCCUGCACCAAUCAUUUGCAGGGUGGAUGCACAAGACAUAAAUUGAAUUCAACUUAUUUGAUUCGGUUCAAAAAUGUCUCAUCUACAAGGCACGCAUGCUGAUACAGGCAUGCAAGCACUCUGGACACAUCAGGCAUGAUCAUGGAUUUCUCAUGGUAUAACUUCACAACUGGAGCACCUGCUCCGGUGCUAAGCCCUGCCAUGACAGCAAGAGCUCAGGUUUGCUGGUUGAAGAGUUGAAUGAUAUGGCAUGCAAUGGUAAGCGACGUACCCGUUGAUAGCGAGGCGCAUGUGGUGAUUUCAAUCUCCAGGAUGGAUCCUGUGGUGACUUCGUCAAUCUCCAGGAUAGAUUGGCCGGUCGAGUCUUCGAAAAUGCUCAUAGGAGUGAGUGUGCGUGAGUUGAGUGUCUGCGUUAUACUGUAUAAUUCUCAAAAUUUAUAACAUUAAGUAAUGUUCUAGUGUUUAGAAAUGAAGUAAAUUAUUUUCAUUUGUGAAUGGUUGCAAAUUAUAUGCACAGUUUAUAGGCUCCAUGUUUUCUGAAUUCAACUCAUGUAGCCUAUUGACUGAUUCCACAUGGUAUUGAGUAUUGACUCUUUCUGAGGACUA

Sequence
(XR_003243753.1):

CUCUGUUCAUAUCCUUCAGCACCUGCUUCCAAGAUUGGCGGUUGGAGAUUGUAUCCCACCACCUCUGCACAUUCUUCCUUGAGUCAUACAGGUAGGCAAAUUCAGAUGUCACAAGGUGGUGGGUGUUUGGCAAGUGAACAAGGAAAGGCCAGGUGGCAAAACAAUGCCCGGCUCGGAGGAUCAAACGCAUGCUCCUCAUGACGGAGCCAUUGUUCAAUGGAAGCCCUCUCCAGAACAUCCUUUCCCAGCAGGAAAGGAUACCCACGCUGUUCAUAGGUUUCUGCUAUGUAGCGGCAAAUUGCUCUUGAUUCUGCAGGUUUAAAAUUCCUGCACCAAUCAUUUGCAGGGUGGAUGCACAAGACAUAAAUUGAAUUCAACUUAUUUGAUUCGGUUCAAAAAUGUCUCAUCUACAAGGCACGCAUGCUGAUACAGGCAUGCAAGCACUCUGGACACAUCAGGCAUGAUCAUGGAUUUCUCAUGGUAUAACUUCACAACUGGAGCACCUGCUCCGGUGCUAAGCCCUGCCAUGACAGCAAGAGCUCAGGUUUGCUGGUUGAAGAGUUGAAUGAUAUGGCAUGCAAUGGUAAGCGACGUACCCGUUGAUAGCGAGGCGCAUGUGGUGAUUUCAAUCUCCAGGAUGGAUCCUGUGGUGACUUCGUCAAUCUCCAGGAUAGAUUGGCCGGUCGAGUCUUCGAAAAUGCUCAUAGGAGUGAGUGUGCGUGAGUUGAGUGUCUGCGUUAUACUGUAUAAUUCUCAAAAUUUAUAACAUUAAGUAAUGUUCUAGUGUUUAGAAAUGAAGUAAAUUAUUUUCAUUUGUGAAUGGUUGCAAAUUAUAUGCACAGUUUAUAGGCUCCAUGUUUUCUGAAUUCAACUCAUGUAGCCUAUUGACUGAUUCCACAUGGUAUUGAGUAUUGACUCUUUCUGAGGACUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

37

LEP:

7.52%

ME_num:

441

MEP:

89.63%

HE_num:

13

HEP:

2.64%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.69

Avg Expression:

5.80

Tip: OSA-LNC107282065 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.5744148396180.0311997950581167