RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107282063

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

19712794

End:

19714921

Strand:

+

Ref_name:

LOC107282063

Sequence
(XR_001548299.2):

GCCGUCUCGCCCCUGACCUCUAUUGCAACGCCGUGCCCUGUGCCCCUGUCUACCCACGCCAUUUCCAACCUCGACAGCGGCCAUCGCGCCCGCACUGGCCUGGGUGAGACACCCAUACCAGCAGGCCACAAGCAAUGAGGAAAUCCAACGAUAUUGAAGCUUUUCUAAGAGGAAUUUUAUAGUACUUGAGAAGCAAGAUCAGCCUCUAAAAUAUGAUCAUAUGAUUGCAAUCAGAUAGUGAUGAGCACAUCAGUCAAGACAUGAAGAAGAUCAUGAGAUAAAUUUGCCUGUUAAGAGAGCCUAAGUGGUGAAGCUCAUUCAACCACAGAUGCGGCAAACAUGGAUGAUGUUUUUUUAGGUUGAUUUCAAUAACUACAUGCUGAAGUGCAAAUCCGUAUAUCUGUCCUAUAAUCAUAUUCUUAAAUGAGGAGAUGGUCAGGGUACAUUUUAAAGCAAAGACAUGCUCAAGCAAAGAAAAUAUCAGGAUAAGGGAGGCUUAAGCUGAUUCUGAAUAUAUGGUGUGUUGGAGGAAGAGCAAGAUACGCGCUGAACGACAUGAUCGAACUGUAGCUCUUGCUCAGCGAGUACAAAAGCCAAAGAAGGAUUCGAGCAGGCAGCGCCAAACUUCUGAGAUCAAACAUGCUGAGAAAUGCGAAAAAACAACACCCACAAACUUCUGACAAGAACGAAAAUUUGAAAGUGAAGUGGCUGUUGUGGAAAUGUUAGUACUUACAAGUUCCCCCUAAUGCUCGAUUGCCAUAUGCGAACUUUUAUAGGUGAAAUCAUAUGGUGUAUCAAGCCAUUGAUGUUUUCCCUUUUUGCCGAUGUGUUGUAAAGUGGCAGGGUUAUGUAAUUCUAUAGGUUAGGUUAAAAUUGACAUCUCAUUACUGUAAUGCUGCAAUUUCAGUCAGUGGAAUAUCAAUUAUUUGGGUUAUUUAGAAAGAUAAAUACAGCUGAUGGGUACACUAUGUGAUUUUGUAUAAAGACAGUUUGUUUCUUUCUCC

Sequence
(XR_001548300.2):

GCCGUCUCGCCCCUGACCUCUAUUGCAACGCCGUGCCCUGUGCCCCUGUCUACCCACGCCAUUUCCAACCUCGACAGCGGCCAUCGCGCCCGCACUGGCCUGGGUGAGACACCCAUACCAGCAGGCCACAAGCAAUGAGGAAAUCCAACGAUAUUGAAGCUUUUCUAAGAGGAAUUUUAUAGUACUUGAGAAGAUAGUGAUGAGCACAUCAGUCAAGACAUGAAGAAGAUCAUGAGAUAAAUUUGCCUGUUAAGAGAGCCUAAGUGGUGAAGCUCAUUCAACCACAGAUGCGGCAAACAUGGAUGAUGUUUUUUUAGGUUGAUUUCAAUAACUACAUGCUGAAGUGCAAAUCCGUAUAUCUGUCCUAUAAUCAUAUUCUUAAAUGAGGAGAUGGUCAGGGUACAUUUUAAAGCAAAGACAUGCUCAAGCAAAGAAAAUAUCAGGAUAAGGGAGGCUUAAGCUGAUUCUGAAUAUAUGGUGUGUUGGAGGAAGAGCAAGAUACGCGCUGAACGACAUGAUCGAACUGUAGCUCUUGCUCAGCGAGUACAAAAGCCAAAGAAGGAUUCGAGCAGGCAGCGCCAAACUUCUGAGAUCAAACAUGCUGAGAAAUGCGAAAAAACAACACCCACAAACUUCUGACAAGAACGAAAAUUUGAAAGUGAAGUGGCUGUUGUGGAAAUGUUAGUACUUACAAGUUCCCCCUAAUGCUCGAUUGCCAUAUGCGAACUUUUAUAGGUGAAAUCAUAUGGUGUAUCAAGCCAUUGAUGUUUUCCCUUUUUGCCGAUGUGUUGUAAAGUGGCAGGGUUAUGUAAUUCUAUAGGUUAGGUUAAAAUUGACAUCUCAUUACUGUAAUGCUGCAAUUUCAGUCAGUGGAAUAUCAAUUAUUUGGGUUAUUUAGAAAGAUAAAUACAGCUGAUGGGUACACUAUGUGAUUUUGUAUAAAGACAGUUUGUUUCUUUCUCC

Sequence
(XR_003243793.1):

GCCGUCUCGCCCCUGACCUCUAUUGCAACGCCGUGCCCUGUGCCCCUGUCUACCCACGCCAUUUCCAACCUCGACAGCGGCCAUCGCGCCCGCACUGGCCUGGGUGAGACACCCAUACCAGCAGGCCACAAGCAAUGAGGAAAUCCAACGAUAUUGAAGCUUUUCUAAGAGGAAUUUUAUAGUACUUGAGAAGGUACCAAGUACCAAAUCUCUGCUGUUGAUUUCUUAAGAUCCUAUGGAAUGUGUCAUAUUGAAAUUAUGUAUUAUGAAUUAUUUUUGAAAUGUUGCAGCAAGAUCAGCCUCUAAAAUAUGAUCAUAUGAUUGCAAUCAGAUAGUGAUGAGCACAUCAGUCAAGACAUGAAGAAGAUCAUGAGAUAAAUUUGCCUGUUAAGAGAGCCUAAGUGGUGAAGCUCAUUCAACCACAGAUGCGGCAAACAUGGAUGAUGUUUUUUUAGGUUGAUUUCAAUAACUACAUGCUGAAGUGCAAAUCCGUAUAUCUGUCCUAUAAUCAUAUUCUUAAAUGAGGAGAUGGUCAGGGUACAUUUUAAAGCAAAGACAUGCUCAAGCAAAGAAAAUAUCAGGAUAAGGGAGGCUUAAGCUGAUUCUGAAUAUAUGGUGUGUUGGAGGAAGAGCAAGAUACGCGCUGAACGACAUGAUCGAACUGUAGCUCUUGCUCAGCGAGUACAAAAGCCAAAGAAGGAUUCGAGCAGGCAGCGCCAAACUUCUGAGAUCAAACAUGCUGAGAAAUGCGAAAAAACAACACCCACAAACUUCUGACAAGAACGAAAAUUUGAAAGUGAAGUGGCUGUUGUGGAAAUGUUAGUACUUACAAGUUCCCCCUAAUGCUCGAUUGCCAUAUGCGAACUUUUAUAGGUGAAAUCAUAUGGUGUAUCAAGCCAUUGAUGUUUUCCCUUUUUGCCGAUGUGUUGUAAAGUGGCAGGGUUAUGUAAUUCUAUAGGUUAGGUUAAAAUUGACAUCUCAUUACUGUAAUGCUGCAAUUUCAGUCAGUGGAAUAUCAAUUAUUUGGGUUAUUUAGAAAGAUAAAUACAGCUGAUGGGUACACUAUGUGAUUUUGUAUAAAGACAGUUUGUUUCUUUCUCC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

146

LEP:

29.67%

ME_num:

119

MEP:

24.19%

HE_num:

226

HEP:

45.93%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

2nd_leaf

Tau :

0.69

Avg Expression:

17.22

Tip: OSA-LNC107282063 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-1.139405418381771.61904060390784e-06
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-1.312148985855244.83574796204255e-07
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-1.456594487075231.82864055316505e-10
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-1.254228474504821.31079457723545e-05
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-1.381078333739231.94643973531594e-07
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-1.501813440796453.20593095426013e-08
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-1.582460319629741.04605496540731e-12
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.702418056277373.91149184401143e-13
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-1.426090207117673.40310083981654e-12
10Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-1.510420313365.34788774328788e-09
11Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.856559959433812.10149015591603e-19