Chr:
Chr8
Start:
14159606
End:
14162544
Strand:
-
Ref_name:
LOC107282024
Sequence
(XR_003243782.1):
AUCCAACGGAUGAAAAUCAUUCAAUGUUUCACAUCCAACGACAGUGGGGCUCACGCGACGCGAGGUCACGCGGUGGGGGUCAUGCGGUGGGAGAUCGAUCGCGCAAUCAAUCGUAUCCCCUUACUCCGCUUCCUUCCUCCGCAAUGGCAACUGCGCCUCCGCCUCUCCUCCACCUCCGGCUUCCCCCAAAGUCCAUUCGAUCCUCUCACCCUCGCCUCGCCUCGCCUCGGCGAAUCGGAUUCCGAGCACUCACAACCGGAUCGGAGUGAGUUCCAUGGCCUGAAUCACUCCUCCACCUCCGGCUUCCCCCAAAAUCCAUUCGAUUCUCUCAACCUCGCCUCGGCGAAUCGGAUUCCGAGCACUCACAACCGGAUCGGAGCGAGUUCCAUGGCCUGAAUCAUGGGGGGACUGGCCGAGGAGAGGGGCGCCUCUCUCUCUCACACACACACUGGAUUGGUUACUCUGGAUUCCGUUGCUUAAUUUGUCCACUGCAAAUGCAACUCCACGACCAGCUCACCGAUCGCCGGACACUGGUGGAUCCAGUGUGACUGAUUCCGCUAAUCCUCCCAUUCGCCAGCCGGCACUGCUUUGGGGAACUCUAGCUCUCAUUAGGCACCUGUUGUGAUCAAUCAUGCCACCGAACUGAAGCCGACCAUCCCACUGCCUUUGAUCGAUUGCCUGUGUAUCAGGCUGUUGAUGUUUUGUAAGUCACAAUUGGGGAAAAAAUUUGAACUUGUGAUGGCUGAAGGAACACGAUAACUUUGGGUUGCAUCCCGAUGUGAACAGGUAAUGUGUUGAGUUGCUUUUUUUUUCUCCAAAUGACUUAUUAAUUUGCAGUGGUACACCAUGGCACCUGCUCCUUUUUUCUAUGUAAGCAAGGAAUUUUGGUUGGUUCUAUUAAUUUUUCUUUGGUUGGAUGUAAGGUGUAGUUUUCAGGUCAUUGGAGGCUCUAUAUAUGCUUGUAAUCCAUGUGAUUUCCUCUUAUCACAUUGAAGGCAUCUCCUACUGUUGAUAUUUGUCGGUCCCCAAAUAAUACUCAUCUUUGCAAAAUUUUUCUUUCCUUGAAUUAUUCAAUGUCUUAGAGUACAUGACCUUGCAAUGCCACUUCCUUCUUGUUGCAGCACAUUAUUCAGUUUGCGUUAUGAAUCAAAAAGUGGUUAUAGUAGAUAGAAAUAGUUUGGAAGAACAGGGAGCCUAAAGAUCCUUUCAGUGGAUGUCCGUGUUUGGGCGGCUUGAGACCAUCUUAAUAUUGUAGGUGCAGGAAAUUAAACUAAGGUAAAAGCGAGAUGCUGAUGUUAGGUGUAGAUGAUAUGGAUACCUGAAUCAGUCCAAACCUGCUUAGGUUGGAGCUACUUCUCGAUAGGAAUCCAAAUAUCAGAGGGAAGGUUGUCCUUGUACAAAUUGUCAAUCUAGCAAGAAGUACAGUGGAACACAGAGGAAGCAAUAAAAGAAGUGGAUUACAAAGUGUCAUCCUUAUUUACCAUCAUAUAUUGUUUUAAUGAAAAUAUUUUAUUUUAUUAUGCAUCUGAUUGUUAUUGUAAAUGUUAUGAGGGAUAGUAUGAAUUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
77.64%
ME_num:
MEP:
11.38%
HE_num:
HEP:
10.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.95
Avg Expression:
22.74
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 7.51501261761581 | 5.85911604526109e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.32267713570754 | 0.00566833420899544 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.55614329494683 | 0.0270406000601807 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.72616866366006 | 0.0204624010675841 |
| 5 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 8.88618683866297 | 5.20392557054104e-10 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.1380449824564 | 0.00624477969353618 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.81480864131131 | 0.00588464074960864 |