Chr:
Chr8
Start:
23886660
End:
23888265
Strand:
+
Ref_name:
LOC107282019
Sequence
(XR_003238323.1):
GUUCCUCCUAGAUUCAAUCCAGACCGCACAGUCCCGAUCCAACGGUGCCCAUCGGCUGCUUUCCCUAAUCGCGUUUAUUCUUCGCGAACCAAUCGAUUCGCCGCCGGCUAGCCGCCGCUGCGACCACCGCGCCGCUUCGCCGGCUGCUCGCCGAGCGGCGGCCGGCGGGUGGAAUGCGCGCCAGUUGUCCGAUGGAACGCCUCCGGGUUGAGUGCUCGCCUGGCUCCUUCGGAUAGAAGGAGGCCAUGGCCGCCGCGGGCAACGGCGGCGGAACAGUACGGCGACGGGGGGUUUCGCGAAGUCGCCGUUCAUUCCUCCUCAACUGGUCACGCGGCAGUGCUGGGUGCGGAGGCUGAGACCAAUGGCGAGGUGCUAGUUGCCGGGAGAUGGACAUCAUGAACCUGUGAAUGGUUAUGGACAAUGACGCAGCAGGUCCCAAGAAAACAACAUUAUGCCAAUUAACAUGGAAAAAGGCAAGGUGGUUACUCUUUUUCAGACAUAAUAGGUAUUGCUAUCAUAAUUAUCCUUUUCUUACUAACUAUUAGAGUGUGAAACACGUUCAUGAACUGCUUUCCUGUUAGGUGGUAUGUCUACCUUCCUUAGUACAAUUGUUUGGUAUUGUAGUAUGUGUGCCCGUCCCGUGUUCAAAGUCCUUUUAUGAAUGUGGAAAUUUCGUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.1%
ME_num:
MEP:
42.89%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.92
Avg Expression:
8.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.3822576465986 | 0.000404300817564446 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.46589911068812 | 0.000146865653465337 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.44228611964859 | 0.0143093460998853 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.50218358287426 | 0.0053960775760142 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.14672426900649 | 0.0134208193635889 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.95441267679973 | 0.00205474490091817 |
| 7 | 9L136 // leaf // control--/--9L136 // leaf // salt | -2.15521101434053 | 0.0402194118742978 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.8636968833521 | 0.0221554801741231 |