Chr:
Chr8
Start:
23606570
End:
23611945
Strand:
+
Ref_name:
LOC107282009
Sequence
(XR_001548149.2):
AUUUGCCCUAAACACAAUUCAUUAUCUGCUCCGCCUUCCCGCCACUACCGUCUACCAGUCGUCCACCAACACCACGCCACCACGGCUGAUUCUCCGAUCCGGCCGCCGACAUCGCCGCCGGCAGCGUCGGCGGCCACAAACAAGGUGAUCGUUUCACCCCCUACCCGCCAUUCUCUCCACCGCUUGCUGUUCCUAUCGGGACUAGUCGCCCUAACCAACCCAGGCGACUAGUUUUGGACUCCGCCGCAUCACAUUUUGCACGCACGAUCUCUUCCUCUCCUCUCCUUUAAUUUCCCCAAGUCAAACAGUUGUUUAUUGGAUCGAUCGAUCGAUCGGUCAACUCCUACCAGGGCUACCCAACCCAUCCUACCACCGACCUCGAUCCCAAUUGUUUAAAUGUUUAUUAAUCUCCGGAUCAUCCACCAACUUUACUAGAGAAGCCAGAGAGAUUCGGUCGCGGUCCCUUUUCGCGCGCACGCGGGCCAGGCGCGAGGACCACCGAUGCAUCAAAUGUGCUUAAACCAGCAGCGAUGGCGGUUGUUCGGGGAUGCGGGGGCGGGGCGAUUUACUCGGCUGCCCGCGCGCCGCAUGUGCGGAUAGGUGGGUGGAGUUGUGGCGGGCGGGGCGCACGCUAGGUGUUCGAUGUAAUGCGGCAGUAGGGUCAAGCGCGUUCGCGUCCUGGAGAUGGGGGGAGUUGGGGCCUUGGGGGGUUUAUGAAUUGGGUCAUCGUGCUGUAGGUGUAAGGUGUUGUUUAGGUGGGAUAUGCCUCUCACAGCUCCGACGCCUGAUGGGAAGAAUUGAAUAUUGAUGGUGGGUGGUGUAUCAGUUUGAGGCAUGAGGUCGUCAUUCCUUUCUUUGGGAUGGAUUCUAGGCAUGUUAGAGUUCUUCUUUUGAUUAAAAGUUACCUCAAUCCAGACUGGCAUUGAUAGAAAAAGAACGUCGGCUAUUAAAACCUCAUUCCUGGUUUAGUUAUUCUGAGCAAUGUGAAGGACGGUUGUUCUUUCUUAGUGGUCCUAGUCUGUUCAAUGAAGACAUGCCAUUCUAAAGUCACAUUACAUUGUGAAUUCAGCUUUGACCUAGAAUCCUACUAGAUAACUAGUAGUCUAGGACUCUUUUUGGAAGUCACCAGAGCUUCUUUAUUAUUUAUCAAAAAGGUAGAGCUUUGACAGAGAAGUUGAUAGGUUAACUAUAAUCAGUUUGCACUUGAGCAGAAAAACCCACAGAUCCUUUUGGCAGUACCCCGGCCUUUUGAUUUAGGAAAUAGCUUUUCCACAUGGUUGUCAAUUUGAUUGUUUUCUUCAUUAUGUUAUUGUGCACUUCAGCGUGUGCACAUGGAUACACUUGAUGGUACCCCUUUGAAUACCGCUGCAAGCAUUUCUUGUAGCCUGGAGGAUGUGAAACGUUUAUGUUUUUGCUAAUUAUAUAAAACGUUUUUUUUUUCUGAAAACACACACUGUUUGCGCCAGGUUUGAAACUUGGUUUGCGCCAAGAUUGAAGCUUCCAUUAUUCUUUACAAGUACCAAAUACACCAGCUGCUUUCUUGUCAGGUGCUACCAACAUAAGGUUGUUGCACAAUAAUGCACUUCUUUUCUUAUGCUGACGUACCUAUUUUGAAUUUGCUCUUGAAUAUCAUCCUCCAAUAUUAAUCUGCUAUAAUUGCAGGUUGCAGCCACCUUUUUUUUUGUUUGAAACUUUGCAGCCACCUUCAAUAUGGCUAAUUUUUUAAUCUCUAGUACAUGCGAAUAUGAAUGCCAAUAGAAUAGAAGUCUGAAAUAUUCUUGACCAGUUUAAUACUACCAUAAACUGGUACAGUACUAUUCAACUUAUGUACCAUAAUGGCCUUCUAGGUAGUAAUGUUGAGAAGCUAUGCUUAUGGCCAGUACAGAACUCACCAGUCACCAGUAUGUCUUUGGCAUAAUCAAACCAUGGUGCCCACAUUGCUGUAACCAUUCUGAAAUUGCAGAAUUAGCAUAAGGGAGUCUUCUAAGGUUAAGUAGAGUGCCUUGAAUUAUUGAAAGUAACAGAUGGCAUUACGAAUAAAAUUUGUAUCACUGAGUAAUUUGCUAUUUGAUGUGCAUGGCUUUUGUUUGUUUGCAUACCCAUAGCACAGUUGCACACAAAUUACCACGUGUGCUCUGGCUUUUAGGUGAAAAGUUGAAAUAAGAUUAACCUUUUUCUCUCUACUUCUGACCUAUUUAAGGGGUUUGUUUGACUUUAUGGUAUUAACAUGUGAGAACUCUUCGAAUAAGUGUCAGCUUGCCUACCUAGGAAAGUUGUAGCUGAUAAAAAAAUAUUGCAACAUGUCUUAGAAAUGUUGAAUAGUUGUUAAGUAACAGGUUGGUGUAAGACAGGAAAAGAUUACGAUCUUUUGUCUGGAUGUCUGGGUUCCUGGCAACUGAAAAAACAUUUUAAUGGGCCAAGUCCAAUAGGGUAACAAGUUGUGGAGGCCAAUUUUUAGCCCAAAUAGUGUGAUCCUUCAAGUGUCUGCAGAAGUGCAAGAUGCAAACUUCAGAAUUCUGGUAUAGUUGUACCAACUAAUAGGAAGCUUUAUGUUCUCAUGAUUGCAGAACCUGCACCUAUAAUCUGGUAAAUUUCUCACACAUGUUCCUGCUGAAGGUAAAACUUGACGCCUCUUUUAUGCAAAGUUAAAUUUGACUUGUAUUGUGUAAUUUAUCCUUCUCAUUUCAGUAUGCUUCUUUGGAGCCCCUUCCUGUGUUGAGAUGAGAAGCACCUGUUUCAAAGUUGUAUUGUAGAAACUAGAAUCCUAGAGUAUCAUUCCCUUUCUGGUAUUUCCGCAAAUGUACAGAUUUUUAACCUUACUAAUGCUUCAUGCAUGUUCCAUCUUCUUACCAGUCUGGGUUCCUGGCAACUGAAAAAACAUUUUAAUGGGCCAAGUCCAAUCGGGUAACAAGUUGUGGAGGCCAAUUUUAGCCCAAAUAGUGUGAUCCUUCAAGUGUCUGCAAAAGUGCAAGAUGCAAACUUCAGAAUUCUGUUAUAGUUGUACCAACUAAUAGGAAGCUUUAUGUUCUCAUGAUUGCAGAACCUGCACCUAUAAUCUGGUAGAUUUCUCACAUAUGUUCCUGCUGAAGGUAAAACUUGACGCUUCUUUUAUUCAAAGUUAAAUUUGACUUGUAUUGCGUAAUUUAUCCUUCUCAUUUCAGUAUGCUUCUUUGAAGCCCCUACCUGUGUUGAGAUGAGAAGCACCUGUUUCAAAGUUGUAUUGUAGAAACUAGAAUCCUAGAGUAUCAGUCCCUUUCUGGUAUUUCCGCAAAUGCACAGAUUUUUAACCUUACUGAUGCAUCAUGCAUGUUCCAUCUUCAACAUCAUGUUAUCAUGAUCGUGGAGUGGAAUGAUAGAACCAGUCAAGGAUCAUGAUUGGCUCUCAAGUACAAAGAAAUUCAGUUGGAGUUGGCAGGGAAACCAUUCAGUAAUUAUUUAGGAUAAUAUGCCACUUACCGAAGCAAGCUGUUUAUCAAGCUGACACUGUUAUAUAUGUUGAGUUUGACAUAUUUUCUGAUGUUGAGUGAUGGGCAUGAUUGCUCUAGUGGGACUGUGGGAGGGCUCAGGUGCCGGGAUGUAUUGCAGGUGGGGUUGCAAAACUGCACUUGCGGCAGGUCUCUACUGAGUUUAAUGGCCUCCAACCACACUGACGUGAAAAUGGGUUGUUAAUAAGGCAUGUCAGUGAGAUCCUAAAUAUUCUUGAUGACUCCGAAAAGCUGUUGAUCUAAAUUUACUGUAAGAGUUCCAAAAAGCAUGAUUCAGAACAAGUUUGCAUGCAAGGUUGGGAAGCCAAAGCUUAAAGGCUAAAUUUGAACCAGGAUGCUGUGCUUGAAGGACAAUCAUGUGAUUUCUCAAGAGAAACAACUGGUUUCUGCUCAAACUCCGCACAAAAGGUGAAUAGCUAACCUCGUCUACAUUUUCUUCUAAGAUGUGAUAUGACUACCAGUUAUAUUUGCAAAACUAGUACAGAUUUUAACCUCUGCUGCAAUUGAUGCAAUUUAUUUUUUUUAUUACUGACUAGAAAGCUCUGAUGCAAAGUCCUUGUUUGUAACACAUGAAUCUUCCCUAUGUCCUGUGAAAUUUCAGAAUUAGAAACUAUAGUGUUUCAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
91.87%
ME_num:
MEP:
7.93%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.82
Avg Expression:
0.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.46715228131055 | 0.0247425689211653 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.30485148599572 | 0.0406416510485391 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.54260740755899 | 0.0410777588325061 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.81677575901773 | 0.0183269998061396 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.92475504874598 | 0.000163474910498682 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 6.40630208047581 | 6.85011217817564e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.09630670906269 | 0.00483040281093614 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 4.37672394833804 | 7.31029886310616e-07 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 6.6221108593318 | 1.3767143591732e-05 |