Chr:
Chr8
Start:
16801444
End:
16803341
Strand:
+
Ref_name:
LOC107282006
Sequence
(XR_001548145.2):
AUAAAACGAACAAUCCAAUAUGUUUUGAAAAGUCAACAGCGUCAAAUAUUUAGAGACGGAGCGAAUACUAUCUAAAAUAACUUUCCCCUCCCGUCUCUCUCGGUGCCUCCUCUGAGAGGUGACUUUCAGUGCGACGUAGAGUUUUCCCCUCCGGAUUCCCUCUCCGUCUCCGGUGGUCUUUGGCCGCCGGCGAGGGGAUGAGGGGUCCGAGGGAUAGUCGGGCUCAUCCCGUAGUCAGGUCGGAGUUCUCCAGAUCCACAUAGGAGAGGUUGCGCCGGCUGUUCAAGAAUUCUCCAGCAAGAAAAUACACAAGAAUGGUGUUCUUCUCCUUCGGCAUCGAUGUCGGAUUUACAAGGGGCGGCUGUGAUUUAUUUGUUUGGCCAAGGGUACUUUCCGCAAACUGGAUCUACUCCCAGUUCCUAUGUUCCCUCGUGUACCAUGUACUUAAGCUCACUAGAAGAGUAUAAGUGCAUGCUGGGACACGCCGCGCACAGAAAUUGGCUCGAACAAAAUUACCAUGAAGCACAAGCACAUGCUAAAUAUUGUUGACUGAAUGUUUCUAGUUUCACUUAACCAUAGCCAUGGGACUUGUAAAUUGGAAUUAGAAUCAUUUAGGUCAAUAUACAUGGAAAACCAUGAUUUCAAACAGUUAUAAUACUAAAUUAUCAUGUGUUAACCUUUUUAGACUCA
Sequence
(XR_001548146.2):
AAUAAAACGAACAAUCCAAUAUGUUUUGAAAAGUCAACAGCGUCAAAUAUUUAGAGACGGAGCGAAUACUAUCUAAAAUAACUUUCCCCUCCCGUCUCUCUCGGUGCCUCCUCUGAGAGGUGACUUUCAGUGCGACGUAGAGUUUUCCCCUCCGGAUUCCCUCUCCGUCUCCGGUGGUCUUUGGCCGCCGGCGAGGGGAUGAGGGGUCCGAGGGAUAGUCGGGCUCAUCCCGUAGUCAGGUCGGAGUUCUCCAGAUCCACAUAGGAGAGGUUGCGCCGGCUGUUCAAGAAUUCUCCAGCAAGAAAAUACACAAGAAUGGUGUUCUUCUCCUUCGGCAUCGAUGUCGGAUUUACAAGGGGCGGCUGUGAUUUAUUUGUUUGGCCAAGGUAGCUUCAACCUCCAUCACGGAGGUCCCGACUGGGUUUGCUCCUCGGCUCAAUCAUUUGUAGCUUGCCAUGCUAUCAUCUCCGUCGUUGUGGGCAGUGGGCACAAGUUGGAUCAUUGCUCUUGUGAAAGAGGCAGAUGAAGGACCCGAUUGCCUUUUCCUUUUCUUUUCAAGUCCUUUUCUGCAAUCUGCAUGUUCUAAAGUUAAUUUGCUCAUCUUACAGGGUACUUUCCGCAAACUGGAUCUACUCCCAGUUCCUAUGUUCCCUCGUGUACCAUGUACUUAAGCUCACUAGAAGAGUAUAAGUGCAUGCUGGGACACGCCGCGCACAGAAAUUGGCUCGAACAAAAUUACCAUGAAGCACAAGCACAUGCUAAAUAUUGUUGACUGAAUGUUUCUAGUUUCACUUAACCAUAGCCAUGGGACUUGUAAAUUGGAAUUAGAAUCAUUUAGGUCAAUAUACAUGGAAAACCAUGAUUUCAAACAGUUAUAAUACUAAAUUAUCAUGUGUUAACCUUUUUAGACUCA
Sequence
(XR_001548147.2):
UUUAAUAAAACGAACAAUCCAAUAUGUUUUGAAAAGUCAACAGCGUCAAAUAUUUAGAGACGGAGCGAAUACUAUCUAAAAUAACUUUCCCCUCCCGUCUCUCUCGGUGCCUCCUCUGAGAGGUGACUUUCAGUGCGACGUAGAGUUUUCCCCUCCGGAUUCCCUCUCCGUCUCCGGUGGUCUUUGGCCGCCGGCGAGGGGAUGAGGGGUCCGAGGGAUAGUCGGGCUCAUCCCGUAGUCAGGUCGGAGUUCUCCAGAUCCACAUAGGAGAGGUUGCGCCGGCUGUUCAAGAAUUCUCCAGCAAGAAAAUACACAAGAAUGGUGUUCUUCUCCUUCGGCAUCGAUGUCGGAUUUACAAGGGGCGGCUGUGAUUUAUUUGUUUGGCCAAGUGAAAGCAAUCAGGAAAAGAAAAAGAGUGUGUUCACAGUUGUUGGAGGUAUACCACGAGAACCUUCGGCCGAACCUACCGAAACCAAGGGCCUAAGCAAGGGCGCAAGACGGAGGCAAGGGACGAAGGCCGAGGAGACAACAUGGGCGAAGGCCACAUGGCGAAAGCCGUGGCAUGAAGUACACAAGCUUCGCCGGGGAUGGACCUCAUCGGAGAGCCAUUCGGCCGAAGACUACGAGGCGAAAGCCUUGCCACGAAGGGCAUGGGUUUCGCCAAGUACCAAACUUCACCAAGAAAAGGCCCAGCGGGCCAACAUGCCUUCCGGAGGCUUCGCCAACAAUUGGGCCGAGCUACUUGGCCCAUUAGGAGCCCAUGCAAGCAAAAGACACUGUAUGCCCAUAAUAAUGUCCCUAUCAUAAAAGCAACCAUGUAAAUUCCCCUGUAAAGCCUAAACCCUAGAGGAGGAAUCUGUAAUAGGGUUAUAAGUAGCCCAUGUAACAGGGGAUCUGAAAAAUUUUUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
88.01%
ME_num:
MEP:
9.96%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.97
Avg Expression:
6.86
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.81216723063902 | 0.0179323875639379 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.90646482233747 | 0.00523512596141506 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.47368929881063 | 0.0152259887243583 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.94907502100684 | 0.0190746088941412 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.28541284430847 | 0.0243912864609086 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.36362683244667 | 0.00675454138193371 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.5870694095061 | 0.00319124031243549 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.75927171055358 | 0.00154525999920067 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.35039181130054 | 0.00192099200283735 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.8070847529183 | 0.00971680161958786 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.65042128389019 | 0.00455363361488331 |