RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107281983

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

10461063

End:

10461929

Strand:

+

Ref_name:

LOC107281983

Sequence
(XR_001548121.2):

CUAAUAGGCGUCAGCAUCUUCAACACAAGCUGCCUACGUCUGCUGCCGACUGCUACCACUACUGAUGGACAUCAUCGUCUUCCGUCGCCGACUGGUUAUGCCGCCGCCGGCUGGUGCUUUUAUCUUCACAAUUAUAUGUCUUCACUACCGCUUUCCUACUUCACCAACCACGACGUCUACAGGAGCUUCGACAUCUCGGCAUGCGUCACCAAAUAUGAUGCCGUGUUAUAUUAUUACAACAAGUGGUGUUCCAAUCUUCAAUAUUUCUACUCGGACAUCUUCAACAUGCAUCUUUACUCAAGCAAUGACUAUUCGACUACAAGAAGCUACAGUUCUCGACUCUAUGUUCAGUUGUUUCUCAACUAACCAAAGAGUCGGGGGCUACACAAAUACAAGACUAUCAAAAUUCGACAAGCUUUAUGUCAAGAUUAAGCAAUCAAUCAAUCAACGAGUCAAUUCGGGGAGUUAUUAUCUUCGUCUACGCUUCAGAACCGUCAUUUAAUUUCAGCGACUCCAAUUAUUACACCGGCAAUUUUGGCUUCUUCACGCCGUCACAAUCUACUCCAAAUAUUUCCAGUAUCAAUUUUGAAAUUUAAUCUACAUGUUCGGGAGUUUGGAGUUAUCAACCAAUAAGUUCAGUUUUGAUGAGUUGGGCAAGAGCAUCUACUUUCCUCCAAGUGAAGAAUCUGCAACAGCUAUAACACCAAAUUCUACUGCCAUCUUUAUAAAUCAAGGAGCUUUGCAUCAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

240

LEP:

48.78%

ME_num:

247

MEP:

50.2%

HE_num:

4

HEP:

0.81%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.78

Avg Expression:

2.57

Tip: OSA-LNC107281983 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-4.878841224255470.0458875064457607