Chr:
Chr8
Start:
12369973
End:
12372807
Strand:
+
Ref_name:
LOC107281871
Sequence
(XR_001548093.2):
CAUGACCGACCCGUCCUUUCCAUAGCAAGCACGAACCGACUUGUUUUCCACCGCCAACCAGGGCAGCCACGCCGGUAUAUAUGGUCUUCCCCCUCGCCCCUCUUCCUCUCUCUCUUCGUCUCGUCACGAUUUCUCCUCGGGGUCCUCUUCGAUUCGUAAGAUAUGAUGAGAUUUUUGCUUCAUCCGUGUUGCUCACUUUGCAACUGGUGGCCUGUGUGCGUAAUUGAUCUUUUGGGUGUGGAGCUGUAACCAUGUACGAUGAUUUCUUCGUUAAUGUCGCCUACAGCCAGACUCCUAAGAUUUUCCUACUAUGCACAGAUGCUUUCCUUCCUUGCAAUGGUGCCAUGAGCAUUCCUUCAUCUAGGAAUCGUGAUGGUGAUGAUGUUUCUUGUUUGAUGAUUGAUGUGCUGCUAAUUAGAUGAUGUAUGUCCAUAUCUCCCAACCAGAAGAUAAGGUAAUGACCUCGGUAAGCUAAUGCACAUGUAUGUGCAUGUUGUAUAAUCAUGUUGUACUAUAUACUAUGUAUGAUGUAUCUAGAUUUAGGGUAGGAAGGCCUUUGCCAUGUUGGGUGCGCUCGCUUGGCAGGCCACAAGACAAUAAAAAGAUAUUUUCCUUGUGUUGUUGGGGUGGAGAUCGCACGGGGAACUAUUCAUUUUAUUUUGCCCCGGGUUCUUCACCCCGACCUGGUGUCCCUGUCUCCACUGUGUUCUCUCUUAUGUCCUGGUGUUCAUGUGGUGCGUGACUGUGCGCUUUCAUGAGUCCUACCAUGCGGAUAAUCACAUGUCGAAGAUCAUCAACGAUACAUCUCAUGGAUAACUACAUGUCGAAGGUACACAUAAUUUACUGCCUUUCAGUCCUUCAUGUGGCUAAAUAUCAAUCAUUGUUAACUUGCUCGAGACGAUACUGCAACUAGCAAUUUCAGCUAAUUUAAACUCAACUAAACUAACUUGUUGCAUUCCACACUGAAAGGUUACUGCCUUUCAGUCCUUCAUGUGGCUAAAAUAUCAUUUAUUGUUAAUUUGCUCGAGACAAUACUGCAACUAGCAAUUUCAGCUAAUUUAAACUCAACUAAACUAACUUGUUGCAUUCCAAACUGAAUACGGUCGGUCUUACUGUCAUGCUUAGGUUGUACUUUUGUCCCCGAUAUAACCUGCAUGUAGCUUAGCUACCAUGCCUUGAGCUAAGAUGAAAAUCUAUAAUAUUAAAUUUGGCCUUAAUUAAGUAGCCUGCCACUUCGCUAGACAACCAUACGUGAUUAGGGCUUAACAUACCAAGUUUUCUAUUCACUCCACAUUUGUAGAUGCUUAAUUGUUUUCAUUUCCUUGCGUCGCCACAAAAGCUAAAUCAUGUAGUAUCUCAAUCGUUCGGUAUUGACUAAUCUCCUGAACUUCAUUGUCGUUUUGCUGAUGUACAUUUGAUUGUUGACUAUUACAAUCACAAAUGUAUGUGGUGUUCAUUUGUCAAGGGGUGCUUCAUUCCAAUUGCUGUUGUAUAUGAGUUUUGUUGUACAAAAAAUGAGCAGUUGCUGGACAGAGCUUGCUGUACAUGCAUGUCCACAGCUGUUAUCAUUUGAGUAUGCUUUCUGUUAGUUCAUCUUUAGCGAGCUGCGGGGAGAAUUUACAUAUCUGAAGCUAGUAUUCAUCAUGAUGCUGCAACCAGCACCAACCUGGCCUUGGAAGGGGACUGGUGUCAUGAUGGAAGAUACAAGGCGAUGUCCUGAUGGUGAGUCUGGCGAAUCUGGAAUUUGUUGAGGAAGACACAAGGCGAAAUGGGUAAUCUUAAAGAAGCUGUUCCUAUGGUUUUUGUGGCAUUGAGGCAGUAAAAUCAUGGGAUCAAAUUCUUCUGGGAAGAUUCUGUUGAUUCAUCUGAAUUUUGUUGUCUUAUUGGGUGUCACAUAAUUGAAGCCUACAUAGAUUUAUGCUAAUAUCUGCUCCUCGUUGCUUGCUGAGGGGGAGGUGAAAGAUCUGCAUAUGUUGGUGAAGUGGUGAUAGCAUGACUGCACGCCUGGUGAUGUAUGAUAAUUAAUUUAAGCUAGUA
Sequence
(XR_003243676.1):
CAUGACCGACCCGUCCUUUCCAUAGCAAGCACGAACCGACUUGUUUUCCACCGCCAACCAGGGCAGCCACGCCGGUAUAUAUGGUCUUCCCCCUCGCCCCUCUUCCUCUCUCUCUUCGUCUCGUCACGAUUUCUCCUCGGGGUCCUCUUCGAUUCGUAAGAUAUGAUGAGAUUUUUGCUUCAUCCGUGUUGCUCACUUUGCAACUGGUGGCCUGUGUGCGUAAUUGAUCUUUUGGGUGUGGAGCUGUAACCAUGUACGAUGAUUUCUUCGUUAAUGUCGCCUACAGCCAGACUCCUAAGAUUUUCCUACUAUGCACAGAUGCUUUCCUUCCUUGCAAUGGUGCCAUGAGCAUUCCUUCAUCUAGGAAUCGUGAUGGUGAUGAUGUUUCUUGUUUGAUGAUUGAUGUGCUGCUAAUUAGAUGAUGUAUGUCCAUAUCUCCCAACCAGAAGAUAAGGUAAUGACCUCGGUAAGCUAAUGCACAUGUAUGUGCAUGUUGUAUAAUCAUGUUGUACUAUAUACUAUGUAUGAUGUAUCUAGAUUUAGGGUAGGAAGGCCUUUGCCAUGUUGGGUGCGCUCGCUUGGCAGGCCACAAGACAAUAAAAAGAUAUUUUCCUUGUGUUGUUGGGGUGGAGAUCGCACGGGGAACUAUUCAUUUUAUUUUGCCCCGGGUUCUUCACCCCGACCUGGUGUCCCUGUCUCCACUGUGUUCUCUCUUAUGUCCUGGUGUUCAUGUGGUGCGUGACUGUGCGCUUUCAUGAGUCCUACCAUGCGGAUAAUCACAUGUCGAAGAUCAUCAACGAUACAUCUCAUGGAUAACUACAUGUCGAAGGGGUGCUUCAUUCCAAUUGCUGUUGUAUAUGAGUUUUGUUGUACAAAAAAUGAGCAGUUGCUGGACAGAGCUUGCUGUACAUGCAUGUCCACAGCUGUUAUCAUUUGAGUAUGCUUUCUGUUAGUUCAUCUUUAGCGAGCUGCGGGGAGAAUUUACAUAUCUGAAGCUAGUAUUCAUCAUGAUGCUGCAACCAGCACCAACCUGGCCUUGGAAGGGGACUGGUGUCAUGAUGGAAGAUACAAGGCGAUGUCCUGAUGGUGAGUCUGGCGAAUCUGGAAUUUGUUGAGGAAGACACAAGGCGAAAUGGGUAAUCUUAAAGAAGCUGUUCCUAUGGUUUUUGUGGCAUUGAGGCAGUAAAAUCAUGGGAUCAAAUUCUUCUGGGAAGAUUCUGUUGAUUCAUCUGAAUUUUGUUGUCUUAUUGGGUGUCACAUAAUUGAAGCCUACAUAGAUUUAUGCUAAUAUCUGCUCCUCGUUGCUUGCUGAGGGGGAGGUGAAAGAUCUGCAUAUGUUGGUGAAGUGGUGAUAGCAUGACUGCACGCCUGGUGAUGUAUGAUAAUUAAUUUAAGCUAGUACUUCCUCCGUUUCAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.32%
ME_num:
MEP:
12.2%
HE_num:
HEP:
30.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.85
Avg Expression:
151.02
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 9.5427124238217 | 2.98610485197597e-43 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.40436395128456 | 8.42115115114564e-20 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.67914958690012 | 2.1069176805411e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.32998243555343 | 4.86178380485396e-13 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -8.6736161771787 | 4.40162973729121e-12 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.04976141198273 | 6.57069567473971e-10 |
| 7 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 11.2007932271447 | 2.25174572435159e-21 |
| 8 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -3.63118476575899 | 0.00480872446762769 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.9990282280476 | 8.85454551437711e-17 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.5075470689038 | 3.37988714447843e-07 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.02837112440188 | 9.53737874170524e-10 |
| 12 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.32376466786003 | 5.68019377234938e-12 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.91340357886013 | 7.10744721876164e-20 |