Chr:
Chr8
Start:
21477297
End:
21479514
Strand:
+
Ref_name:
LOC107281856
Sequence
(XR_001548058.2):
GUAAAAGCUAUAUUUGCAAAGAAUAUGUCUUCUUGGUACUCAACAAUAUGUGUGAUUUAAUUAUCUUCCAAAUUAUGUAAAUCAAGCAGAGUUACACAUGCAUGAAAACUAAGUUUCGAAUUUGUCAUAAUAGUACAGAACUAUGUUAAAUGAAAGCUCUCUAUAUAUCUGCAUGUUCAUAUAAAGCUAUAUAUGCAAGGAAUUUUACUUUUUCAUUAGUAGUAUAUGCAUACAUAAAAGAUGUGAUAGAUAAAACAUUAAACAAUAAAAUAUUGAAUAACCACAACAACCCAAUCAAACAAGGAAUAAAUACGUGUCGACCAAUGAUUGAACCACACAAUAAAAAACUAUAUCUAGCCGUCCCUCUCAUAAAUGCAAACAUAACAUAUCUUUAGGACAGAUCAAUCAUCGUCCACACAUUGAAAUGUGGACCUAGUGACAUCAAUCAAUCCGUGGAUAGGUGUUGCCGACGGGAUGCGCCAGUAAUGACGGAAAGGCAUUCGGAAAAUAUUUUUUUCUUUAGAAAGAACCCCAUUCCCCACGGUAAAAAAAGCUGACAACAUGAUAUAGCAUGAUAUUGUAUCCUCUCCGGGAUACGGCAGCGGCGGCCGGCCAAACCCUAAGCUAGAACAGCAGCCGUAUAUGGCAUAUCAUGAGAAAAGCAGGAAAAGAGAGAUAUGGGGUAAAGGAUUUAUGAACCAUGGUCUCUUCCCCCCUCUAUAUAUAAUGCUGCAUCCACCAGGCUAUGGUCACACACCACCAAUCAAUCAAAGCACACAGAUCUGAGCUAGCUAGCGCCCACCUUUCUUCUCCCACUCCGGCGGCACAUCUCCGCCGCCGGCCGGUCAGCCGGCAGCUAGUGGCUCUCUCGCUCCUAUGUGGCUAUGUCUGUCUACCUAAUGGUUUUCUGUUUUCUUGGUUUUGGGUGGUGGCAGUUGACAGAAGAGAGUGAGCACACAGCGGCCAGACUGCAUCGAUCUAUCAAUCUUCCCUUCGACAGGAUAGCUAGAUAGAAAGAAAGAGAGGCCGUCGGCGGCCAUGGAAGAGAGAGAGAGAGAGAGAUGAAAUGAUGAUGAUGAUACAGCUGCCGCUGCGUGCUCACUUCUCUUUCUGUCAGCUCUCCCUGCAGCAUGCACGCUGCCACAGCCACACUCUCUCCAUUAUCUAACUGCUCCUUUAAUUUCCUCUUCUCUCUCUCUCUCUCUGGACUCGCAUCGAUCUCCGAUGAGAUAAGAGCAUGCUGCUGCUGCUGCAACGCGGUGGUGAUAAAGCUAGGCAGCGCGGGACCUCGUCCUUAUCUUGUACUGCAGGUUUGGGGGUGAGCCCUAUACGUGCCAUGAGCUCUCUGACCGAGGACAAGGAGGAGGAGGGAGGAGACGGCUUUGGAGACUCUUAUUUUGGCAUGAGCUACUAUACAUGGGCUUUGCCAUAGUAGUAGUAUACUCCUUUUGCUCUUCUCUGCUUUUGCAGGUUUUUGUCUUGGUUUCCCAGAGAUCUGGGGGAGGACGACGACACUACUACAGCCAGCCAGCCUCGGGGGAAUAAGCUAGGGAGCAUCGCGCGUGACGAUUUGAUUAAUUAACCUGUAUAAAUUCGAGUGCUAAUUUGUCACGCGCGAUUAAUUAACCUCGAGUCGAUGGGUUAAUGAUGCUGCUGGUGAGAAAAUUACUAGCGGAUCCCAAGAUCUGCACGCCAUAUGGGGGAGAAAGGACGGCCAUGGCAGCGGCUAGCUAGCUGUGAUUAUUGGAGAAGGUUGAUGUACACUGCAGAUCUGGCAACCUGCGCACCUGCCCCAGAAGAGAGGAGAGCGUCAGUAUAGCGGCUGGCCCAGAUCUGGAAACUGCGCUGUAAACGUAUGUAUAUUGGUUCGUACUUGUUGGCUUCGAGUUGGAGAUCGAUCGAUCUGAUCUUAUAUGUUGCUCUCAUCGAUUGAUUUCUGUUGAUAGAAGUUUCUUGAGGUUUUCUAUUUGCCUAUUUGUUGUGUACUGAUUGUUCGAGUCUGAAAGUGGUUGCUUGAUUCUAACUAUGCCAACAUUCAUGUGCAUGAGUUUUUUUUUCCUUUUUCAAAUUUAUUUUUGAGGAAUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
28.46%
ME_num:
MEP:
55.69%
HE_num:
HEP:
15.65%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.80
Avg Expression:
6.03
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 4.64915994167697 | 0.0324567686397172 |
| 2 | 9311 // leaf // control--/--9311 // leaf // salt | 3.10897529278817 | 0.000672519601985543 |