Chr:
Chr8
Start:
16916620
End:
16917477
Strand:
-
Ref_name:
LOC107281841
Sequence
(XR_001548017.2):
CCCUUCGUCAAAUUUCACAAACCCUAGCCUCACUCUGUUCGUAGCAUGGAUAGAUAGUGGCGGCGGAGAGGCGACGGCGGUGCGAGCAGCAGUGGCCGACAGUUGAGGGCGGUGCAACGAGUCUUGAUGAGCCAUGGCCUUAGCAAGCUGUUCUUUGUGUUCAAGUCGUCGUCGUCGGAGGACCUCAAUCCCACUUAUCUUGUGCCCUUGAUGCGGGGUGAAGCAAAUCGUGGAGCUUACUGCUAACACGGAAGCUAAUCAAGGCCGCAUAUUCUUCACAUGCCCUUCACACGAGAAGGGUGGAAGUGGUUGCGAUUUUUGGUAUUGGGAGGAAGGGUAUAUUAAAUACCUGAAUAGGAAAGGCUUGAUUGAGCAAAACACUUGUGCAAAGUUGCUGAAUGAAGCAAACCAGAGGGAAAUGCAGAGGGGAACUGAAGAAAUCAAGCUGGAUGCAGAUGUGAAGAAGAAGAGCACGGUUCAAGAGAUUAGAAAAGAUGCAGAUGUUGAAGAAUUUAAGCAGGCUGAUCAUAUGUUGCUCAUUUUGAGGGAGAUGAUGGUGAUGAUGAAGCUCAUGCUAGUUGGUGGUGUGUGUUCAGUUGGUUUGAUAGUGUGUUGUUUCCUUGUUCUAUGGUUUAAGUGAUGUGUGCCCAUUGUAUCAGUGAAUUUUGGGUUGUAUUCAGGCUAAACCAUACUGUGUUGGUUUGCAAUGUGCAAUGAGAUGUGAAACUUUUGAAAUGGUAAUGUCAGGUUUGCAGUCUUUAGUACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
29.07%
ME_num:
MEP:
40.65%
HE_num:
HEP:
30.08%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.72
Avg Expression:
13.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.62790660794033 | 3.5382210950018e-05 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.81825424655201 | 1.45489443292511e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.0001824978356 | 0.00317110403153587 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.47847017857019 | 1.29493297061688e-13 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.70102263585734 | 8.86716491479124e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.42845148519992 | 8.43102186354317e-10 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.12947608808394 | 4.69789347163362e-11 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.58169930503245 | 4.7928786858531e-06 |
| 9 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -6.35035178737123 | 0.00118208963904444 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.1613605371215 | 2.79251744377387e-14 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.45429784606979 | 8.65650677077562e-11 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.5433190242628 | 2.95854809385786e-08 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.12682396622442 | 4.73503747485294e-16 |