Chr:
Chr8
Start:
10503203
End:
10504741
Strand:
-
Ref_name:
LOC107281838
Sequence
(XR_001548013.2):
CCUUUUCAGGCUGAAACUGGAAAAGUUCACCUUUAGUCCUCGGCUCAUUCUCCCUUCCUUUCGGCUGGCCUGAUCCCUCCUCCAAAGUCCAUUUUUGGUCCCUCCUUCAAUCCGGCCUAGUAAAGGAAGCUCACAGAGAAAGUCUACCUUACGUCCCUAGUACUGUUCAUCUUCAACCCCUGGCUGCCAAACUGAGACCGAGUUGGCUCGGUUUUUCUCCUCCGAAUCCGGCCUUAUCUCUCGUGCAUUCCUAAAAUUAGUUGAGGGGAAAUAUUCCUCUUAUCCUCCUCUAUCUCUUCCACCAAAAAUCCGACUUUAUCCCUUUGAAUUCGACGCGAAUUUGGAUUCGUUUUCGAGUUUAUCUCUCCACCAAACCCUAGGUUUUCCCGGCGCGAUUCUUUGCGUUCCAAGCCUGAUCUCUCUCUCCCGUGGCUAUAAAUAGUGUCCCCUCCCUCUCCUCUUUCGGCCGCCACCUCUCCCUCUCUCCACCGUCGCUUGUAGCGCCGUCGCCGCGUUCGUCUUCUCUCUCCGCCGCCGGCAGCCGCUCCAGCCGCCGUUUGCCGCCGCCUCAGCCGACGCCCUCCUGUGCCACCACAUCUCUCGGCUCCGCAAGGUCAAGAGCAAGCCCAGCAGCUGGUUCCCUUGCGCCGAAGACCCCGGGAAGCCCGUCGUCGCCAUCAACCCGAAGUCCAUUGGAUUCGCAGCUGCGAAGUGAAGCCCGGCCACCCUUCCAUUGUCGCCGAAGGUCGCCGAAACGCCGUCGCCACCGUGGACAGUACCUCGUCGCCUUUUGGAGCUUGUCGCCGGCCAUCUCCCGUCGCUGUUUCUCGUUGCCGCCACCACAGAGUCGCCGGCCGUCUUCCGUCGCUGUCCGUCAUCACGUAAGGGUUGGUAAGAAUCGCCGUCGCCUCCUCUACCUCCCGGUGCCCUCUGUUUGCAUUAUUGUGUCGUGGUUCGCCGGCAACCGCCGCUCUUAUGUCGUUCACCGGUGUAGUUUAUCCCUAGGGUCUUAAUCCAAUAUAAUCUAAUCCGUGGUUGGUCUAGCGUUGUCAUCUCCGUGUGUUGCUGCUGGAACGUUGUCAUCAUCCCUUCGUCUCCGAUCACUUUGGUUCGCUUGUUGUUUCCGUCGUUGCGAAAGGUUCGCGAGUGCGUCGGAAGUGGUUCUGAAGACUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.31%
ME_num:
MEP:
75.2%
HE_num:
HEP:
5.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.68
Avg Expression:
3.32
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.22800755606869 | 0.00912390568115321 |
| 2 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -1.34489550980302 | 0.0266024242333459 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.43101907181344 | 2.09207519309864e-06 |
| 4 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.55590876200064 | 2.4223574552172e-13 |