Chr:
Chr8
Start:
25067245
End:
25068460
Strand:
+
Ref_name:
LOC107281836
Sequence
(XR_001548003.2):
UUUACGUGGCAUUAGAAUAAAAAUAAAUUUAAAAAAUACGUGGGACCAUAUGUCAUUUGCACACAAAAAUGGUAUUGUGGAACCCACAUGUCAUCCUCCCUCUCCUUCCCUUCUUCCUCCCCUCUCUCUCCCUUACCUCUCUCUUUCCCCCCGACCUCUCUCUUCACCAGAGCGGCGGCGGCGGUCGGGAGCGGCGGCAGUGGCGAUGGGGAGGUUGGGUUCUUGAUUGGUGUCAGAUUCUUGGUUGGUUGAUGGGGUUUGUGAGGUGUGGCGCUGAGUUGGAAAGAUCCGAUAUAUACACCGGCGCGAACGGGUCGGGUCUCGCCGCCGCCGCCGCGAGGGGGGAGAUGGAUCGGGACGACGAGUGGCUGCGCCGCGCGCUGGCGGCAUUUGGAGGAGGAGGCGGCGGCGUGUGGGAGCUCGUGGAUGCCGCGCUGGCCUGUGCUGUGCACGACCGCCCCGACGAGCUUAUACGACGGUAUCGUGGAGCGGCUCUACGCCGCCGCUGGCGGCGGCUGCAGCAACUGAGUCGGAGGACGAGCUGCUGAGCUUGCUCUGCUGUUCUGUUCCCCUUGCAACAAAAGGGGAGGAGAUGAAGUUGAAGUUCCUGCUUUGUGCUUUUCCAGGAGACGGACAUCGGACGGCAUGUGAACGGCCUGCGCAAACAUCCCUCCGGUGAAGUCCAGCUACUCGCCAUCUCAUCCUCGUCUUCCUCCUCGGCCUCGCCAUGGACCGGCUCCUCGGCGGCUGCGACGGCGGCAUCGUGGCGCGAGUUCGGAUCUGGCUCCGCGACGGGGAGCACCACGGUGGUCACCGUUGCCGGCUCGACGGGCAUCUCGGCCACCGGCUGCUUCUCGUUGCCAUGGAAUCCCUCCCCACGGAGGUAGAUGCCGCCGAACCUGUACGCGUCCCGCCGGUGGAGGCCGCCGCCGGGGCGCCGCGCCAAACCGCCACCGCCGCUCCUCCGGUGAAGAGAAAAGCCGAGGGGAGAGAGAGAGAUAAGGGAGACUGUGAGAGAGGGGGAGGAAGAAGGGAAGCAGAGGGAGGAUGGCACGUGGGUCCUACAAUUUAUAUUUUUUUUAAUGAUAUACGGGUCCUAUGUAUUUUUUUUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
17.28%
ME_num:
MEP:
79.47%
HE_num:
HEP:
3.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.73
Avg Expression:
3.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.63661952303672 | 1.8975273713176e-07 |