Chr:
Chr8
Start:
7990548
End:
7993320
Strand:
-
Ref_name:
LOC107281830
Sequence
(XR_001547977.1):
ACAGGGUAGACAACGCGGGAUUGAGGAGGAGGUGCUGGACCUUGCUGGCGGCCACACGACGGCGGGGUGUAGACAACGCAAGAUUGGGGAGGAGGCACUGGACCUUGCUGGCGGCUACACAGCAGCGGCGGCGACGUGGCAGAGGUGCUAGAUUUGGCUGUCGGUGAGGACUCAACCGGUCUUGGGCGAGGUUAUCCACAUCGUGCCGCUAUUCUUCUCCCGCAAACAUCAGUUACUUGGUUCUAGCAGCUAGGGGUAGAAGAAGAUGACGAAGACCUCGCCGACGGGGCCGCUGCCCCCUCCCCCACCGCAGCUGGCGCCGCGUCUCCCCCUCCUGGUCACGCCGUCGCCGACAGAGAGGGGAGGGGAGGGGGAGGAGGAGGAGGAAGGGUAGGGGAGGACGCAUCUGGAGGGAGAGGAGGAGACGCAAAUGACUUAAAAAGGCGUGGAGAUAUCGAGGAGAUAAGGGCGGGGAGGCGCACACGUGCGACCCGGCGUGUUUUUUCGGAUUUGUAGUCCCAGUUGGUGCUACCAAUCGGGACUAAAGUGAUGAUAUUUAAUUCCGGUUUAUAAUACCAAUCGGGACUAAAGAUCCUUGGGGCCUGACACGGCCUAUCAACUUUUUGAAGCGGGACAAAAAAAAUGAUCUUACCAACCAGGACUAAAUGAUUGUAUUUACGGUUAAUGAUGGUCGUGGUGGUGCGUAUGUGAUAGAAAAAAAAUCGAAGUACAUGGAGCAGAGCCAACUAAGAUUUUAUUCGCAAGGGGAUGGAUAUAAGAAGGAAACACCAGCUUUGCUGAGUGGGACAUCAUUUAUCUUCCCAGAGACCAAGGGAGGCGAGGAAUUCACGAUCUUGGGAUUAAGGUUAUUGCUUUGCUUAGCAAGUGGUUACUUACCAGUUACCACCGAUGAAAUGUGGCAAUAGUUGCUACGCAAUAAAUAUUUGGGAUCAAUCUAUCUAUCGCGGUUGCCACAUCAAUCUAACUCAUGUACGUUUUCUCCUACAAUUGAUCGUAAAAAUCAAUUCUCCACUCCUCCAUCAUCAUUUUCCCCAUGAUUUCUUAUUUCAAUUCUGGCUUUAAUUUGCUAAAUUUAAUCUCUAUUUAACCGCCGCUGAUAAUGGCCGAUCGAUUAGUUUGAUUUGCUCUAAUUUUGGAAAAAUGGGAAAGAGGAGAUCGAGUAGAUCAAAAGCCAUAUAUCAAUUUUGGGAGAUCAAGAAAGAUUCGGUCGAAUUUGAUGGGGAGGAUCAGUUCCGAUAUUUUACGGGCACGGGAGUACUUUCUACUUUCUGGAGGUUGAAGACGGUAGUAGGAUAUGCGAGUUGAAAAAAUGACUUUACCCGUUUUAACGCACGGGUAUUUUUUUUCUAGUAUAUAUAUGUUUGGGAGAUGGAUUUUAUGUGUUCCUAAAGAGAUGGAAAAUCUAAUUUUGAUGGGUGCAAUUGUUGAUCCAUUUGGCUAAGCAUGAACGGAAUCGUUUGUAAUAACAAGAUGGUGUCUUUUCUUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
27.24%
ME_num:
MEP:
33.33%
HE_num:
HEP:
39.23%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.80
Avg Expression:
14.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -8.46366554312318 | 5.95244211331426e-21 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.73158337033546 | 4.59356821002604e-76 |
| 3 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.41591501759245 | 0.0097934152975559 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -10.860550023271 | 3.17335650940719e-15 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.50731254300582 | 0.0197969689391597 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.04751957704249 | 7.23360223461537e-08 |
| 7 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -6.91923118544214 | 0.0239215391535072 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.08257184335371 | 0.043997763197193 |
| 9 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.01261586418108 | 0.0138118532824224 |
| 10 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.01252786185624 | 0.0138070683307197 |
| 11 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.01246333106397 | 0.0138722858359058 |