Chr:
Chr8
Start:
15729467
End:
15731898
Strand:
-
Ref_name:
LOC107281828
Sequence
(XR_001547961.2):
GAAAAGCCCACUACACCACCUUCUUCCUCUUCUCUUUUUUUUCUCCUCGUUCUCCCCUUCUCUCCCCCACGUUCUUUCCAGUGCCGCCGCUUCCUAGGCAGCGCCGGCGACGCCGCCACUCUCCCUAGCGCCGGCUACCGCGCCCCACUCCGGCGACCCCUCAAGCAGAUGUCCCGCAGCCGCGAAUCGGUUUCUUGGCUCCACGCUUCUCUGCCCCUAAGCUAAACCUAACUUCCAACCUCCUCAAUCCUAAAUGCAGCCGCCGGCAAAACUCCGGCGAGGUAAGGAUUCAGAGGAAGUUCCCAGGCCCCUACCGCUGCUACCACUUCGAUUCCUCCCUUCUAUCUCCUUUUCCCUGAUCUCUAGUGUGUUAUACUGUGGUUGAUGAGGACAUGGAUUAAACUAUUGGUCAACUAAUUAUAUACAUAUCCACUUGAUUCAGAUGCUAUGCUCUAACCUCUUCUCUAGAUUAUUUUCUGUAAGAACCUAUGGUUUUCUGUUUGGUAUCCUUAAUUGCUCAGUUCUAUUCUUUUUACUAAAACCUGCUGCUACAUGAUCUUCUAUAUUUUAAUCUGAAAUACCAGUGCUUCCUGAACUUGGUAUUAUAUAUAAAUGAAUGUUUCACCCUAAAUCCAAUUAUAUGGUGAUUCUAUACAAUCUAAAAUAUAUACUACUGUUUACUAAUUGAACUAGCCUAAUUGAUAGAGUUGUUAUGGUCCUUAUGUUUCAUGAUAAAUUGAAUAUGUGCUAGGGUUCAGAUACUAAUUUCCAAGUCCAUGGCUAAAUCUAAAAUCUGAUUUUAUCUAUAUGUCAAGAAUAUCAAUAUUUGUACUAUGAAUAAAGAUCUGCAGUUACUAAAUUUGAUAAAGACAUAAGACUGAUGAUAUCUUUAUAUACAUUCUACUGUUUCUUGAUUUAUCACCUGAGCACCUGUUUAUCUAUAGUAAAAUUUUAGUUACACAAACCGUUCUGAAGAUCAAACUAUUAAUGUGAAUAUUUUACUGAAUCAGAGAUGUUCUGGUUCAGCUUCUAAUGGAUGCAAAUGCAACACCCAAGGCCUACACAUACUAGUAUAUGCACAGAUCAACAUAGCUGCCAUCUCCUGAGGUUCAUUUUUCAGGUUUAAUGCAUAUAACUAAGUGCGUGCACACAACUCCUAAACAUACUAAUAUAUGCAUCAACCAAGAAUCAUGACAUGAUGUGAUUUCCCUCUCAUUCUAAUUCUUUUUCCAGAUUACCUUAUUUGAUGGUUCUACUGUGGCUGUGGAAGACUAAUGACCGUGUGACUCUCCUCUGGUUCUACAGCUUCUUUUGAAAUUGGUCAGGGUGUUGCUCCUCCUCUUGUUUACUGCUGCCCUUCCGGAUCUGCUACUUGUUUCUCCUCUUUAAAUUGAAACCCCUUGCUCUUCUUGAAACACAUGCAUCCCCUUUCUUUUCCUUCUACUCUCUCACCCUGGUUGUUUUUCUAUGGCUGCUGCUAUUGAGAUUUGGUGUAACUGUGGUGCCGGAUUACUAGCUACUGCUCUGCUAUCUCUCUCUUUUGAGAUGGUUUUGCAUACGAACUGCUUGCUGCUACUGCUGUUGCGGCUGAGGCUGCUGCGACAUGGCUGUGCUCUUGCUGUUGCUACUACUACUGCCACUGCUUGCUGCCUAUGCUGAUCUGCACGACCAAACCGAGGCUGGUUCACAGAUAGCUGAGUUAAUAUAUGUGGGAAUUUUUAGUGAAAGCUAAGUGACUCACCUACUUGGGCUAGAUGGCUGCUCCUAGCUUUGACACCUAUGCAGUGCUUGAUCGGUGGAGUAUUGUAGGGUUUCACUAAUUUUUUUUAUUAGAUAGUCUGAUAUAAUUAGGUACUUUUGCACUUGAGUCCCUCAGAGUCUCUAAUAUUGAAGGUUGCUUUGAGAUUAGGGACUGAUUUGUAAUUGCCCUAGAACUCAAGAGUUUUUCUGAAUAAAUAAUUAAUUGAAUCUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
6.71%
ME_num:
MEP:
84.15%
HE_num:
HEP:
8.94%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.60
Avg Expression:
6.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.45427332163804 | 1.16188380710096e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.85558887830022 | 1.30486148197065e-09 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.44115447313188 | 1.1396596413634e-12 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.13889532583625 | 6.39297027121141e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.84213781809411 | 3.10539764273908e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.60703863165077 | 1.30714813229276e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.29666662754921 | 0.00146748995404112 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.76577142587871 | 1.12175024328406e-10 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.52813770063585 | 0.0227309955750174 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.66906837621337 | 3.7022798010155e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.27763646516518 | 4.39604877219034e-07 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.8306452419889 | 2.38011151548935e-10 |
| 13 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.78688603134679 | 0.00369901923255769 |
| 14 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.78696266272405 | 0.00377098457337241 |
| 15 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.78711874369972 | 0.00371217581225886 |
| 16 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.05535693072569 | 0.00210119743437549 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.10891636317573 | 6.0924381973011e-10 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.08047569317793 | 3.17369699310551e-13 |