RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107281817

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

20130459

End:

20135289

Strand:

-

Ref_name:

LOC107281817

Sequence
(XR_003238342.1):

CAAACAUGGUGAGGACAGAUUAUUUUGUUCAAAUUUUUAUGGCUAUGGACUCGUAACUAGUCGAUCACACCACACUUACACCAACACACUCAAAUAUAUAAGCAUAUUACUUAGUCGUAGAAGAACGAACAAAACAACCAGAAGAUGAAAAGAAAAGAACACUAAAAUUAAUUGUGGAAAAAACUCCAAAAUCAACUUUAAAAUUAAAUUCUAAAAUUUAAAUGAGCCAUGGCGGUAAACCAACCAGUAAACAAAUAUUUUGUUUGGGGAGCUUAAAAAUCUAAAAACAGCUGGUUUGUAUCUAGCUUCCGAGAAUUUAAAAAAGUUGAUUUUCCCAACUUCUGAUUUCUAAUUUACUGUAUGGGUUCUAUAACUACGUAUUUUAAAAAUCCUAGCCAAAAAUCUAGAUUUUUAAAAAGAACUAGAUAUUCUAAAAGAAGCUAUAGCCUCCAGGUUGUUGCGGGUCGCCGCCGUCAGAGCUAUGUCCGCCCCCAAUUGGAUCGUUGCUGGGGGACUGAACUUACUCUUGCUGGCCCAUGUGGCCAUGUAUAUGGGCCGGCCCAAAUCCAUGGCCCAUGUGACCCAUGUAUAUGGGCCGGCCCACUCCGUACGCGCGGCGGGCCGCAACGCAACCCCACCUGGCCGGGCCCGUGAAAUGCGUAAAGCGCCGUCCCCGAACUGCGCCGCAUUUGACCGAUUCCGGCGGCGGCGGCGGCGGCGGCGGUUUCCGGGACGAAGAGGCGGAUCGGCGCCGGAGAUCCGACGAAUCCACGGCGGCACCGGCGGCGGAGGUGCUAGGAUGGAAUCGGGGCCAGCAUUUCUUCACCCCGCACAUUUUGAAUUUUUGAUCCGACGGUUUCUGUGACUCGAGGCCGGAGAAAUUGGAAAGCCGGCGCGUCGUCGUCGUCGAGAUCGGCGCCGUCGUGUGCAUCGAUGAUUCAACGUGGUCGAGGAGAGGAUCGCUCGCGCUCGCGGCGGAUCAGAUUCAGAGACCGUCCCCAAACCUCAUGUAAAGCUGUGCAGACAAACCUCUACAAGAGCAACAAAUGAGGCCAUCAUCAUGGCAAAAGAUUCACCAGCAUCAAAUGUUGGAGCCCCCCAUUGAAAAGGGAAAGGAACUCUUAUCCUACAAGAUUUUUUUUUCAGUGCUUCUAUGAUGAGUACUAUCAAUAAAGGGCCCAGGAAGAGAAAUGAUGAAACACUCAUGAAUUGCUUACCAUGGAGCUCCACUGAUAAUUCCAGAGCGAUCAACACGACAGUGCACUUGUGUCUUCGGCCGGGCAUUCUUGUAUGCGCCACUAGCAGUUAGAAUGUAUGCAUACAGCCACACAAUAGCAAUGGUGAAAAUCACAGCAAACCGGUCGAACACGGGCUUUGCCACAUGUAUGACAUGGGGUAAAUACUGCACAAGGGGGCAAAUGCAGUUAGCUCAUGACUUUCAGCAACCACAGCUAUACUUGUGUGAAUAUGCAUUAUGACUGCUGCAAUCACCUGAGAAAAUACAAGCAGUAGAAUGAUUUCUGGGAGCCCAAUUUCCACGCACUUUGCAACCUGCACAUACAGUUGUGGCACUAAAAUCAGUCUUAUGAGGUAGGGAACAGCCAAAGAAAAAAAAAAGAAUCUCCAAGCUAACUCUUACCCCUGGAAAACCAAGCUCAUAGAGGCCAAAUCCAGCAAGUGAGAUCAAAGGAACAGCAGACAAUGGACUAAGAAGUCUGUGAAAGAGUGGGCAAUGGUCAAGCCACAAACUAAAACAAUACAUUGUGCAACGAGUCGCCAAACCUGAUAACUGAAACACUGCAGUUGGCAAGCCUGCAAACUGAAAUGAUGCAAUUGCACAAUGUACAUUCAGAAGUUCAACAAUGAUACCUACCUAACUACAUUGCGCCAGAGACCACUGAAACCAAGUAUGAUCUGGAUUGUCGAUGCAAUGAUGAGAGCACCUUGUGUUCCUCGCAUUGUCCGCAAGAAUUUCUUCACAGCAGUAGCAAAAUCUUACCAACUUUACAAGAUCACACAGAGGAUGUGACAAUCUUAAUGCUUAGAUACAGCUAGUGCGGAUACUACCUCAUGAGGAUCUGCUUCAUUGCUAUAGCGGCCAGCCAAUAUGAUGGAAAUUGUCGGCGCAACAAUGGUGUACGAUCCUCCCAUCACAGCUGGAAGACGAGUCCCGAAGAACGAUUGGCAGAGGGUGUUUAUCCCGGCAACGAACAGCAGCGUCUGAAUCACCCGAGCCUUCUCCUCCUGAGUGGCAAUGCAACGAAAUGCAGGUGAUUCUUGGGGAGACUCACAUUUCCACCUCCCAUCUGGGGAACAAGAGCACUGGGAAUAAUCACUGAUGUGCCCAGCAUCACAAUGUAGUGCUGGAAUCCAAGUAUGACGGCCUCAGCUGCAGGAAAAGAGAGAUUC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

261

LEP:

53.05%

ME_num:

230

MEP:

46.75%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.80

Avg Expression:

3.27

Tip: OSA-LNC107281817 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN2.079475410152390.024133372601248
2IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA)6.474223610408220.0435385307347229