Chr:
Chr8
Start:
12425464
End:
12430657
Strand:
-
Ref_name:
LOC107281812
Sequence
(XR_001547869.2):
CCAGCGGGAGGGGAGGCGGCGGCAGCCCGUCGGCGUCCCAGCGGCGGUGGCGCCCUCCCCUCCGUUGGAUCCAGCGGGAGGGGAGCCGGCGGCGGCCCGGCGUACCUGCGACGGCGGCACCCUCCCCUUCGAUCUAGCUGGUUGCUAUGGAGGUUUGUACUGGUGUUUGGAUCCACAUGUCAAACAGAUUUGCCUUGUGGUGGGAACUCUUCUUCCUCCACAACGAUGAAGUGGCGCCGUUCUUUCAAAUCAUCUCCGGUGGGGUUGUUGCUACUGGUUUGAUGUUGUCGACGUUUUAAGUCAUGACUACGGUAUUUGCAUGACAUGGGGAUCGUUGGUACUAAAGUAUAUGCGAGAUUGAGGUAGAGUAUAUGCGAGAUUGAGGUAAAAGAGUCAGAGACAAGGAUUUUUAUACAGGUUCAGGCCCCUUCACAGGAAGGUAACGACCCUACUCCUGUUGGCCGAAGCUGGUAUUGCUCUUUGUUCAUCUGAAUCACACAAGUACAAUAAUUGGGAUAACCUAUCUAGCUGUCGUUGACUUGGCGGUAUGGAUCACCAACACAUAGUCGACGACAGGGCAGUCUUCCUCCUCAAGUACGAACUCAUCGAGAUCAGAGGUGGCGCUAGAUCCCCCUUAUCAGCCUCCGCAGGCACCAGAUUGGAUCUGUCUAGGCUAAUAUCUGAUGUCGAUGUUUGGCGGAAUAUUGGUUUGUUCUGGCUUAUGUGUCCCCUCUCCUCCUAGGGGGUCUUGUAUUCAUACCCAUAGAUGUCCCCUUGUCCAAGUAGAACUAGGGAGAUAAAUAUGGAUACAAUCCGAGUAGUCCUUAUCGUUUCCAACUUGAACUCUAUUUGUCCUACCUUAUCCGGAACUCCUUCUAUAUACGAGGUACGAUUCCAUAUAAGAUUUGGUAUAUGGUGGGCCCUGCUGAGCUUAGUCGAUUACUAUUGGAUAUGUGCUAUUCAUAACCCUGAUAGAAGCCUCCGACUUCAAUGCAAAUGAUCGACUUGAUGUUCUCAACCGAAGACCUUGGAAUAUCAGUUUUUGUGCUCGCUUAACCAUUCUCGGACAACCGAGGAGGUGAGGAGAAUGUGACUUAAUUCCUUAUCUUGCCGUAAUCAAGAAUUUGGAUUGAAGUCAGAAAAUUUUGUCUCAGCGGGUACAGCGUUACUUUAUUCCGUAAUCCUUGUCGAACUCCACCAACCAUUCUCGAGUAAUCGAGUAGUUAUAAAGUCCGCGACAAAGCCCUGAAGUCUGACAUUCCUGAAAUCAAAACUCAAAACAAAUUGUUAGAUACAAAUAGCCCCCGAGCGAACGCUCAAGGGUAACACGAUAUAAUAUGAAUUUGAAAAUUGAAAAUAAAUUGAAUUUGCAUGUGACAAUAAAAGAGUAUUCUAGCUAAAGCUGUACUCAAUAAUUGGAGUAUGGUACACUUCCUAGCCCUCACCUGUCUUUAUGGAAAAGUCAUUUUUCCACAAAGGCAGCUUAAAUCUUAUAACAAACCAAGUUGAAGCUAACAAAAUCCUAGCCCCUAGCCAUGAAGUUGGGAAAGCCAAUUCCCGAUUACACGGCUUAGUUAAUAUGCAUUUAGAAUAGCGUAAAGGAAUAAUAGGACGACUUCAAGAUAGGGCGAUAUAAGAAAAGGGGAUCAACGGAAAAAUAUUGCACAUACAAACACUUACAGAAUUUGACGCAAAUGGGUUGAUGAGGUCACUACCACACAAGGCGAAGACCGAGUGUGUAGUUGUAUUCAAUAAAUCAUAGAGGUAGUGGGAGAAUCGCUACGCCGCUGAUGAUCGAAGACCAGCUGUAAUCAUACCUCAACCACUAGGAGUUGAGGUGCGAGGACCGCUACGUCACUGGUCGAAAGACCAGUUGUAGUCAUCGUCUAGACUAAUAGAAGUUGAGUGAUAGGUGGCGGAAGAUUGCUAUGACCGACUAGUCGACAACCAGGAGUAGGAAUCUCUCGAUCACCUAUAGACAACUGAUAGAUGGCGAGAAAUCGCUACAACCGACUGGUCGAAAACCAGGAGUAGGCAUCUCUCAAUCACCUGAAGAGAACUGAUAGGUGGCAAGAAAUCGCUACAACCGACUGGUCGAAAACUAGGAGGAGGCAUCUCUGAAUCACCUAAAGAGAACUAAUAGGUGGAGAGAAAUCACUACAACCGACUGGUCGAAAACCAGGAGUAGGCAUCUCUCGACCACCUGAAGGCAACCGAAGUCGUCGACUAGUUUGUUGUCAGAGAAUCCAUCUCUUGAACCCAUCUCGUCAAAACCUUGGAGCACCAAAAUUCCCCUACCUGGCGCGCCACUGUCGACAUUUUAGGUCAUGAUUAUGGUAUUUGCAUGGUAUGGGGGUCGUUGGUACCAGGGUAUAUGUGAGAUUGAGGUAAAAGAGACAUAGACAAGGAUUUUUAUACAGGUUUGGGCCCCUUCACAAGAAGGUAACAACCCUACUCCUAUUGGCCGAAGCCGGUGUUGCUCUUUGUUCAUCCGAAUCAUACAAGUACAAUAAUUGGGAUAACCUAUCUAGCUGUCGUUGACUUGGCGGCAUGGAUCACCAACACAUAGUCGACGACAGGGUAGUCUUCCUCCUCAAGUACGAACUCGUCGAGAUUAGAGGUAGCGCUAGAUCCCCUUGUCGGCCUCCGCAUGCACCAAAUUGGGUCUGUCUAGGCUAAUUCUGAUGUCGAUGUUUGGCGGCGUAUUGGUUUGUUCUGGCUUGUGUGUCCCCUCUCCUCCUAGGGGGUCUUGUAUUUAUACCCAUAGAUGUCUCCUUGUCUAAGUAGAACUAGAGAGAUAAAUAUGGAUACGAUCCAAGUAGUCCUGGUCGUUUCUAACUUGAACUCUAUUUGUCCUUUCUUAUCGGAAACUCCUUCUAUAUACGAGAUGCGGUUCUAUAUAAGACUUGGUAUAUGGUGGACCCUACCGAGUUUAGUCGAUUACUAUUGGGCAUGUGUUGUCUCCGACGAGGCAUCUCCAAGGUUCGACCGAAAGUUCUCAUGUUCAUAGAGUUCGCUUCAACAUCCGAUUUUGCAAGGCCCGUAUUGCGGCUCGAUGCAAUCUUUUGCAGUCGACCUCGUUUUCGCCGUAGCCGUUGUCGGCUUCAUUGUCUAGGUCACUGAAUCAGGAGAAGAAGCGAAACGAGGCUAGAUUGCUUUUCUGUUUUCUUUUGGAGUCCUUAUCUGCAUAUUUCAAGAAUCUUUUGCAAGUUGUGUUAUACUUCUACCUGCUUGUUCUACUAAGAGCAACUGAAUCUCUCUUUGAGAGAGGCCUAAAUCACUCAAUACUAUAUAUUGAACUAAGUGAUUCCUGCGGAAAUUACUAAGCAAUUCUCAUUUCUAUUUUCUUGUAUAUACAUAUAUUUCUAUUAGUAUAUGUAUAUAAAAUUGAUUGAAUGAUGGUUGGGAAUAGUAAAUAUGAUAUGAUAUCUUGGUUGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
17.28%
ME_num:
MEP:
41.87%
HE_num:
HEP:
40.65%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.76
Avg Expression:
13.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.43839882067533 | 4.52029828755892e-16 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.79929035031833 | 2.86259570409201e-25 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.45069498794074 | 3.53480522150399e-41 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.48724823861641 | 1.07784734981757e-11 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.4491917430189 | 2.33602742777396e-29 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.10577922542217 | 3.5181549704198e-22 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.68756095255558 | 7.46771820404255e-21 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.47238676637926 | 7.95613447133085e-46 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.85057277738022 | 4.15028742614174e-13 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.89072516364067 | 8.94350954864334e-27 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.33648293153654 | 1.78720872050693e-39 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.76185241807326 | 1.17009046381105e-30 |
| 13 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.35607712920405 | 1.09191675213758e-56 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.58894435639709 | 3.13557152659964e-34 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.56379726517301 | 1.81536320235483e-59 |