Chr:
Chr7
Start:
5973723
End:
5975506
Strand:
-
Ref_name:
LOC107281788
Sequence
(XR_001547748.1):
AGACUGAUACAAUCUUAUGGAUGUACUCCAGUAGAUAAAUCCACUUGAUUGUCUUGUCCUCCAUGUAGGCCUUCCAGUACACCUCCUCAAGGUUCAUCGAAUCGACUCCGAGGAUCGAGUCGAUACCGUGAAUGAACUGGCGGUUUCUUACUUCCUCAUUGCAGCUUACAUCGAAAUUCAACUGGCGCAAGUACUGUGAAUGGCCAGACAGUAUGAUCUGGCUAGCUAUCUCAUUUAGGCCAUGGAGGGAUUCAUGUCUGAUAAGGCUGAAGCUGUCAUAAUCGAACAUGGGCAUCGCAUUUUCGAAGAAUUGGUGGUCUAGAUUUUCUGGAUCAAGCCCAUUGUCGGUCAUGGUUUGCGAGUCGGUGAGGAAGGAAGAAGAUGUGACGCUGCUGCGGUCAUCAUGGUGCCAAGGAGGAAUGAAGCUGAACCAAGGAAAUUGGAGGGCGUGAAGGAGCGGACGGGAGUAUGCAUACGUGAUGCGGAAGCACAAACUGGAUUACAUACAGGCUAGGGGUGGGGCCAUGGAGAUUAGCAUGUGAUUUGAUCUGAUGGAUCAAAAUAACAGGCCCGCCGAAUUAAAUGAAAACUGAAGGCUAGAUGUUUUACUUUAUUCUUACAAUUUAUAGCAAUUUCUUUAAUAUAUUAGAGUGCCACGAGGCGUUAUAGGAGUAUUUGUAGGAGUACCACGUGGCGGCUUAAGAGCGUUUGUAGGAUGUUUAAUGGACUUUUAUAGUAUAUAAUAGAUAAAGAUUUGGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
6.5%
ME_num:
MEP:
61.79%
HE_num:
HEP:
31.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.77
Avg Expression:
17.54
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.10103159736688 | 0.000962779911006998 |
2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.43092645874058 | 0.0118683945947967 |