Chr:
Chr7
Start:
4951772
End:
4952094
Strand:
+
Ref_name:
LOC107281784
Sequence
(XR_001547737.2):
GCCAUGCCCCGCACAACUUUUCUUGGUACUCCUUACAUUGAGUUUUGUAUUAUGCAUGUUUCUGUGCUUGUCGUAUAUCAUAUAUGCAGCUAUUAGUACUUGGUACCUGAAGUAUUCCUUUAGGAUAUACUAGUUGUGCAGGGAACUAGGAUAUAUUAGAGUAGCUUAGGAACCCAAAGGAGGGCUUUUUGCUAUUAUCUAGUGUUCACCAGUUAAAUUACAACCACAUUAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
73.78%
ME_num:
MEP:
22.97%
HE_num:
HEP:
3.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.95
Avg Expression:
5.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.54540916384718 | 0.0105835828712485 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.37897179090124 | 0.0101468486575107 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.77410422320875 | 0.0158820203534091 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.71711857027543 | 0.0084331812424753 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.80701765160645 | 0.000264895149129746 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.23838406761694 | 0.0138292878770619 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.02758234527884 | 8.91390826133048e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.42110293432679 | 0.00358350846909606 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.7935491103161 | 0.000212696934488084 |