RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107281772

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

22910866

End:

22914887

Strand:

-

Ref_name:

LOC107281772

Sequence
(XR_001547667.2):

UACUCCUCCUAGACGCGUCGCCAUUCUCCAUUCACCACUCAGAGCCGAAGAAACCGAGGGAGGAGGUUCUCUGCCUCUCCAUCGCCCCAAACCUUGCCGCCGGCCGUGGAGACGACGACCAUCGCCAUCGCUGAUUGGGUAAAGCCACCGGAACGCGACCACGCCGACGAUGCCCUGGAGCACGCACCGGAGCGCCGCCGCUUCAACCAUCGUUGUCGUCCGGCCAUUCUCAUCCACCUCAGAGAAAGCCGCUGCGCCAUUGUCAUCACCUCAACCUCCUCUUCAAAACGCCUCAAGAACCCCAGCCGGAAACAUCAAGAACACGGAGAACACAUCCUUUUCUUCACCGGCGCCAAUCUAGGAUCGCCUCUGCCGUCAUCGUCGAUUACCGCUGCCUCGCUCAUUGUCCCGUUCGAGCCGUCGUCGUUCACCCGAGGAGGAGCGCCGUCGCCGAGCCGUUCCACAAGUCACCGCUGCCGCCAAGACCUCGACAACCCUAGCUCGACCCACGAUAAUUGCAUAAUCGGUGAAGAAGUGGAUUAGGUGCUAACAAUUCUCUGAUCAAGGCAAGUUUUCUCCUCCCAUCCUUUGAACACAUUGGAUCC

Sequence
(XR_003243235.1):

UACUCCUCCUAGACGCGUCGCCAUUCUCCAUUCACCACUCAGAGCCGAAGAAACCGAGGGAGGAGGUUCUCUGCCUCUCCAUCGCCCCAAACCUUGCCGCCGGCCGUGGAGACGACGACCAUCGCCAUCGCUGAUUGGGUAAAGCCACCGGAACGCGACCACGCCGACGAUGCCCUGGAGCACGCACCGGAGCGCCGCCGCUUCAACCAUCGUUGUCGUCCGGCCAUUCUCAUCCACCUCAGAGAAAGCCGCUGCGCCAUUGUCAUCACCUCAACCUCCUCUUCAAAACGCCUCAAGAACCCCAGCCGGAAACAUCAAGAACACGGAGAACACAUCCUUUUCUUCACCGGCGCCAAUCUAGGAUCGCCUCUGCCGUCAUCGUCGAUUACCGCUGCCUCGCUCAUUGUCCCGUUCGAGCCGUCGUCGUUCACCCGAGGAGGAGCGCCGUCGCCGAGCCGUUCCACAAGUCACCGCUGCCGCCAAGACCUCGACAACCCUAGCUCGACCCACGGUUUAGUCUUAGUCUUUGAGUGAUGCGGGUUCCGAUUGCUUCUUCUAGGAUGAGAACUUAA

Sequence
(XR_003243236.1):

UCGCUCUCUACUCCUCCUAGACGCGUCGCCAUUCUCCAUUCACCACUCAGAGCCGAAGAAACCGAGGGAGGAGGUUCUCUGCCUCUCCAUCGCCCCAAACCUUGCCGCCGGCCGUGGAGACGACGACCAUCGCCAUCGCUGAUUGGCCACCGGAACGCGACCACGCCGACGAUGCCCUGGAGCACGCACCGGAGCGCCGCCGCUUCAACCAUCGUUGUCGUCCGGCCAUUCUCAUCCACCUCAGAGAAAGCCGCUGCGCCAUUGUCAUCACCUCAACCUCCUCUUCAAAACGCCUCAAGAACCCCAGCCGGAAACAUCAAGAACACGGAGAACACAUCCUUUUCUUCACCGGCGCCAAUCUAGGAUCGCCUCUGCCGUCAUCGUCGAUUACCGCUGCCUCGCUCAUUGUCCCGUUCGAGCCGUCGUCGUUCACCCGAGGAGGAGCGCCGUCGCCGAGCCGUUCCACAAGUCACCGCUGCCGCCAAGACCUCGACAACCCUAGCUCGACCCACGAUAAUUGCAUAAUCGGUGAAGAAGUGGAUUAGGUGCUAACAAUUCUCUGAUCAAGGCAAGUUUUCUCCUCCCAUCCUUUGAACACAUUGGAUCC

Sequence
(XR_003243237.1):

AGACGCGUCGCCAUUCUCCAUUCACCACUCAGAGCCGAAGAAACCGAGGGAGGAGGUUCUCUGCCUCUCCAUCGCCCCAAACCUUGCCGCCGGCCGUGGAGACGACGACCAUCGCCAUCGCUGAUUGGGUAAAGGUCAUCUCCAGCCACCGGAACGCGACCACGCCGACGAUGCCCUGGAGCACGCACCGGAGCGCCGCCGCUUCAACCAUCGUUGUCGUCCGGCCAUUCUCAUCCACCUCAGAGAAAGCCGCUGCGCCAUUGUCAUCACCUCAACCUCCUCUUCAAAACGCCUCAAGAACCCCAGCCGGAAACAUCAAGAACACGGAGAACACAUCCUUUUCUUCACCGGCGCCAAUCUAGGAUCGCCUCUGCCGUCAUCGUCGAUUACCGCUGCCUCGCUCAUUGUCCCGUUCGAGCCGUCGUCGUUCACCCGAGGAGGAGCGCCGUCGCCGAGCCGUUCCACAAGUCACCGCUGCCGCCAAGACCUCGACAACCCUAGCUCGACCCACGAUAAUUGCAUAAUCGGUGAAGAAGUGGAUUAGGUGCUAACAAUUCUCUGAUCAAGGCAAGUUUUCUCCUCCCAUCCUUUGAACACAUUGGAUCC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

459

LEP:

93.29%

ME_num:

20

MEP:

4.07%

HE_num:

12

HEP:

2.44%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.96

Avg Expression:

1.88

Tip: OSA-LNC107281772 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-8.73458298448984.3474155463853e-12
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-4.396347436451332.32107166549896e-16
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-6.541903589559626.70949785228374e-13
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-7.016329703632515.99119341590517e-08
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-7.268409434807771.00072415167996e-08
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-6.543483323058164.05211304647795e-09
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-4.926835997504919.53265730231274e-19
8WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h5.907455766859980.000550795447029531
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-7.838064199537532.73106579231993e-10
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-5.83408263327414.31264404521076e-18
11Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-5.259829610188273.61366250601071e-14
12Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-6.245711067721342.78310310476642e-18