Chr:
Chr1
Start:
927756
End:
929216
Strand:
-
Ref_name:
LOC107281770
Sequence
(XR_003240241.1):
CUGGCAUGUCGGCCCAUGACGGAGGAGGAUUCACAGCCCGGCCCAGAUGUUACAAGCGAAGUCAGAAUGGAACACCACCAGCACCACUAGAUGGGCUCAAACGCCCCCGCGGUGGUGUACGGCCGCCUACGCCGCCCGCCGCCCGCCGCCGGAAUUUCGCCAUUCUGAUAUAAAUUAGUGCAUUGCAUCAGAAAAAUGGUUGUGGGAUUAAUAAAUGCUAAUCCUGUAGUUUAUGAGAAAAAAGAGAGGCGUGCUCGGCAGGCACCAGAAACCACAGAUGAAAAUGCGGCAGAGGCUAUUGACCAGCUAGAAAUAUUUGAUGUGCUUUCUUCGUUAACUUAUCUACAUGCUGUGUACCUUUUCUUUCCUGUUAUACUUACCUCUAUCUGGAGUUCUGCUGCCCUCAAAAUUUUUCUUUUGUUUGCACUCCUUAACCUUCUUACAUCAUAUUAGAGAUAUAAAGGAUCCAGAGCGCCCAUACUCACUGGAAUAGCUUAAUGUUGUAACUGAAGAUUCAAUUGAAAUCAAUGAAGAUUCAAUCGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.27%
ME_num:
MEP:
29.67%
HE_num:
HEP:
65.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.91
Avg Expression:
94.53
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.57460010042618 | 1.95750103390677e-15 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.70407796228454 | 1.0573865331424e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.50355926256994 | 3.32092245461913e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.66066225321919 | 2.85375972920955e-13 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.09806224183702 | 3.90204448533607e-09 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.52419841594931 | 2.70997929993028e-05 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 1.71454870221565 | 3.08608436608184e-06 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.46511684480615 | 0.00013361973955898 |
| 9 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.74886615645201 | 0.00507016892053031 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.6551774684976 | 0.00183468196321043 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.95989143621694 | 4.09256676025e-21 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.20989951260894 | 2.02254941864586e-09 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.24581372011244 | 1.67579751624386e-05 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 2.04768090496548 | 1.99345950619722e-08 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.74667747556428 | 3.93337161622648e-08 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.50006261438261 | 1.11153553020083e-12 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.88714685418861 | 3.69793308624491e-21 |