Chr:
Chr1
Start:
915911
End:
920716
Strand:
-
Ref_name:
LOC107281768
Sequence
(XR_001547651.2):
CUAGCCCUAGGCCGAGCUUAGUUUCUGGUUGCAAACCGUACGGAAUCCCCUUUCCUCCCUCUCUUGCCACGAACCCUUCGCCGUCGCCGGCGAUCCCACCGACUCCCGGCCGCCUCUGCUUCCCCGGCGAUGUCUCUUCUUAGCACUGCGCCGUCAACGCGCGUUGCCCGGUCUAUGCGUCGCCUUCAGUUCUCCCUGCGUCCUUGUGAGACCCGAGCCGCAAAUCCAGGCCCCAAGCGAGAUGCCAUGCCGAGCCGCAGGAUUGACAGAACUCGGGGAGAUCUCCUGAUCCGGUGGUUGUUCAGUUCGCUGCCCCCUCCUUGCAUUGAUAAAGGAUUUUCUUGCAAGCCACUAGCUACGGACCCAUGAAUUACUGAAAUAGUGCAGCCAGGAGUACUCUGCACACCAUGGUUUGAUGGAGAUAUAUCAUAGCAACAACUGAACACGAAUGCCAGAUAAGGAUGUUAGAGCGAGUUGAGGUUGAUUGCGGGUUAACUUAUCAAGGGUUCCACAUAUCAACUCUUGUAUCUACUGAUCAUUCAUUGAAGCAACCACAGAUCUAGCUGCAGCUCCUGUUGUAUCAGUUAACAAAAGCAAUACUCAGGAUUGGUUGUCAACUGGCUCUCCUGCAGUUCCAGGAUGAACCAGGACAGUAUCGAAAAUGCAGCCACAAAAUCUGACAAGUCAGUAAUGCCAGAAGGGAAUGUGAUUCCUAUGGACUCAGCGACUGAAGUAUAAUAUGGUCUGACGUGUUUACUUCUAUGGCCUCAUGAGUCACUUGAUACUGUUGGUAGGUAAUCUUUUCUGUUUUAGUUUGUGUUUAUUCCUCAGAAAAUAUUCUUAAGGAUUGUAUCAAGUGCGUAUGAACUAGCAUGUGUACUGGUCCGUUUACCAACUCUAGCAACUCGAAGUUCUUUAAUUUUUCCUUUUUGUUAUUUGUGACGAUGCUGAGCUAAAUAUGUUGAUGGAGGAUUUUUCUUCUCUAUGUUAUCCAAAUUGUGUUUCUUGGGUAAAUAUCGUGAAAAAUCUUAACAGUAUAUGAGAUUGUUACAUAUAAAAACUGGCUGGUUAUGCUUGUUUAAAAAUAAAAAGCUGGCUAUUUAUUAA
Sequence
(XR_001547653.2):
CUAGCCCUAGGCCGAGCUUAGUUUCUGGUUGCAAACCGUACGGAAUCCCCUUUCCUCCCUCUCUUGCCACGAACCCUUCGCCGUCGCCGGCGAUCCCACCGACUCCCGGCCGCCUCUGCUUCCCCGGCGAUGUCUCUUCUUAGCACUGCGCCGUCAACGCGCGUUGCCCGGUCUAUGCGUCGCCUUCAGUUCUCCCUGCGUCCUUGUGAGACCCGAGCCGCAAAUCCAGGCCCCAAGCGAGAUGCCAUGCCGAGCCGCAGGAUUGACAGAACUCGGGGAGAUCUCCUGAUCCGGUGGUUGUUCAGUUCGCUGCCCCCUCCUUGCAUUGAUAAAGGAUUUUCUUGCAAGCCACUAGCUACGGACCCAUGAAUUACUGAAAUAGUGCAGCCAGGAGUACUCUGCACACCAUGGUUUGAUGGAGAUAUAUCAUAGCAACAACUGAACACGAAUGCCAGAUAAGGAUGUUAGAGCGAGUUGAGGUUGAUUGCGGGUUAACUUAUCAAGGGUUCCACAUAUCAACUCUUGUAUCUACUGAUCAUUCAUUGAAGCAACCACAGAUCUAGCUGCAGCUCCUGUUGUAUCAGUUAACAAAAGCAAUACUCAGGAUUGGUUGUCAACUGGCUCUCCUGCAGUUCCAGGAUGAACCAGGACAGUAUCGAAAAUGCAGCCACAAAAUCUGACAAGUCAGUAAUGCCAGAAGGGAAUGUGAUUCCUAUGGACUCAGCGACUGAAGUAUAAUAUGGUCUGACGUGUUUACUUCUAUGGCCUCAUGAGUCACUUGAUACUGUUGAGUAGGCUGGACCGGGUAUUGGAAUGGAGCCUCUGGAGACGAUCCUGCAGUCCAAGGGAAGCACAUACAUGCAUAGCCGAGCAUCCACCAAAUAUGAGAAGUGACUUGCCUCACUGGGGCAGGAGAUUGGGCCGGUGAUAUAAUCGGCGUUGUUCAUGAAAGCGUAGCCAUCGACUGGAGAAGUACCAUUUGGUGUGAACUCUUUUGAACAGCGUACUAUUUUUGCAGGAGCCCAGCUGUAUAAUUUACAUCUAUGGUAGUCGUAAGGCUGUAGAUUGUCAAAGAUGAGCUUCUGAAGCGGGCAUGGAGACGAGGAGUACACAAGCGGGAUGAUGCUCAUGAUGGCCUCCUUGUAAUCUAUGGAGGUGACC
Sequence
(XR_001547656.2):
CUAGCCCUAGGCCGAGCUUAGUUUCUGGUUGCAAACCGUACGGAAUCCCCUUUCCUCCCUCUCUUGCCACGAACCCUUCGCCGUCGCCGGCGAUCCCACCGACUCCCGGCCGCCUCUGCUUCCCCGGCGAUGUCUCUUCUUAGCACUGCGCCGUCAACGCGCGUUGCCCGGUCUAUGCGUCGCCUUCAGUUCUCCCUGCGUCCUUGUGAGACCCGAGCCGCAAAUCCAGGCCCCAAGCGAGAUGCCAUGCCGAGCCGCAGGAUUGACAGAACUCGGGGAGAUCUCCUGAUCCGGUGGUUGUUCAGUUCGCUGCCCCCUCCUUGCAUUGAUAAAGGAUUUUCUUGCAAGCCACUAGCUACGGACCCAUGAAUUACUGAAAUAGUGCAGCCAGGAGUACUCUGCACACCAUGGUUUGAUGGAGAUAUAUCAUAGCAACAACUGAACACGAAUGCCAGAUAAGGAUGUUAGAGCGAGUUGAGGUUGAUUGCGGGUUAACUUAUCAAGGGUUCCACAUAUCAACUCUUGUAUCUACUGAUCAUUCAUUGAAGCAACCACAGAUCUAGCUGCAGCUCCUGUUGUAUCAGUUAACAAAAGCAAUACUCAGGAUUGGUUGUCAACUGGCUCUCCUGCAGUUCCAGGAUGAACCAGGACAGUAUCGAAAAUGCAGCCACAAAAUCUGACAAGUCAGUAAUGCCAGAAGGGAAUGUGAUUCCUAUGGACUCAGCGACUGAAGUAUAAUAUGGUCUGACGUGUUUACUUCUAUGGCCUCAUGAGUCACUUGAUACUGUUGGAGCCCAGCUGUAUAAUUUACAUCUAUGGUAGUCGUAAGGCUGUAGAUUGUCAAAGAUGAGCUUCUGAAGCGGGCAUGGAGACGAGGAGUACACAAGCGGGAUGAUGCUCAUGAUGGCCUCCUUGUAAUCUAUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
14.63%
ME_num:
MEP:
75.41%
HE_num:
HEP:
9.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.57
Avg Expression:
6.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.65029068879795 | 0.000188974222495392 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.45760900452556 | 1.83329592263217e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.10468131303677 | 6.23841423002636e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.05657244415258 | 0.000576952391782505 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.00243186951033 | 3.60843265144971e-05 |