Chr:
Chr7
Start:
4490873
End:
4492343
Strand:
-
Ref_name:
LOC107281761
Sequence
(XR_001547601.2):
CGGUGACACGAUCUAGGCAACAAGGUAAGCUCUCCUCGGCCGCGUCCACGCCCCGCCGGGCGCCGGUCGCAAUCCACCGUGACCACGUUGCUCCCAGUGUCCUCUCUCUCCCGCAUCAUCUCCAUUUAAUCUUACAUGGAUGCGGAGAGAGUGGUGGAAGAGGUCAGGAGGUAGUCUUCUCUGCAACAAGAUCUGAAGAAGUGCGGGCAAGGAGCGUGGUCCCCGGCGAAUCCAAGUCCGUUGAGGCCUUAAGCAGUAACGAAAUCCAUCUAUUUCUAGAACUUCAUCUAUUAUUUCUAUAUUGCAGUGUGCAAGGCAAUGUUGUUUGUGUAUGCACGUAACAAGAGUGAAACUAAGGGGAGCAGCUCUGGUGCGACCGUGAAGUUGGCAGCACAGACGCAUUUCAUUGAGCACAUCUUUAGCGUUCUAGAUUUCUUGAGUGUUCUAUAUUGUGGCCAGACCAACAAGCUCUUUUCUGCUUCUAAAAGGUGGGUUUUCCAUGAGGAGAUCACUAUUAGAAGCUAAUUCAGAGGAUUUCAGAGCAGAUUUUGGAUGCCGGAGGAUGGCGAGAGUGACACAUUUCAGUAAUCCCCUAAGGUUGCUGAAUUUUGUUGGUAGCUUUAUCUUUUCCUGUGUAAUCUCCCACCAACGCUGAGAGCUCUACUCUAUGUAGUUCCUCCUUCCAAUGUAUAACGUGAGUUGAAUGGGUUGGAUUUAAGUAUAAGUGGAAUAAAUUGUUAGGGCUUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
13.82%
ME_num:
MEP:
79.67%
HE_num:
HEP:
6.3%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.64
Avg Expression:
3.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.22422597475885 | 0.000955417079202731 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.75496554728669 | 2.76697911790294e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.83518515268052 | 9.54830147099928e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.44972975677446 | 0.0171821183124228 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.82393895944359 | 4.68787966611365e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.4480449937854 | 0.000792582085754239 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.61938185619588 | 2.552550243533e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.7566963798401 | 4.16360614532642e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.05824767159995 | 0.00401939462917085 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.5439529667225 | 0.00216268146439141 |
| 11 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.20141170049075 | 0.0452948870825624 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.89779496739235 | 2.02066815741898e-07 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.74919551129342 | 4.69145573228536e-07 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.23739728056136 | 0.005710534763134 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.94776275688223 | 1.68696068648433e-06 |
| 16 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.78504947739908 | 0.000132476995483405 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.251873594437 | 9.96280963437619e-10 |