RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107281755

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

40264940

End:

40271003

Strand:

-

Ref_name:

LOC107281755

Sequence
(XR_001547563.2):

UUUGCAUUAUGCCUCUGCUUCUAACAGUCGCCAUCAGGUUGAUAGCUGAAUUUUUGCUUAUGCUACUGGGGCCUCCCACCUGAAAUGGUACGUUUCAGGCAAUGAGAUUUGAUAUGUACAUUAGUAUGAGCUAACUCUGAUUAAAAUAUUAAACUAACACUGUUUGAAGAAUCAAGGCACUUUGAAACGAGAUGAAGCAUUGGAUUCGGAUGGUAGAGGGUUCAAGCAUGGUAGGAAGUAGUAUAGGAUGUACUAAGAUUAAAGAGUGGGUGUUGUGUUAGGUCUGGGGUCUAUACAUGGCCACAUAGGUAGCGUGCCCUCCUUUUCCAUGUUUGUUCAACAUGAGCAUAUUUGCAAUUACUAGUAGACAGCUGACAAAUGGACCUGAAAAAACUGAGAAACUUAGCUGGUUAUUCUCUCACUUGUGUGACUAAAUGGCUUUUAUAUUGAUCAAUUAUACUAUGAUAUGGACAACCUGUUGUACUAAUUGAAAUAUAUAUUUCUACCAAAGUGUUGGUUAUAUAGUCAAAUUUAACAACCCUUCCUGAUGUCAGAGCUUUGUCAAGACUGGUCAUAACAUUGGUUCAAAUGUAUUUGGUUUUCCCAAUAUGUUUCUUUUGCAUUGGUGAUUUGUGAAGCCUUAAGAUAGGUGCAUUGUCUGGAACCUAAUCCCAGUUCGUACAAAAAAGUGAUUAGCCAUUUCUAGAUUAAUAGUGCGCUUUUGACAUCACCGACCGAAAACGAGGUUAGUUAAUAGAUGACAGAUUUCUGCAACAGUAGAUUGCUUGGUCCUACAGCAGUUGCUGUUCCCUUGUUAAUUAACUUAUCAGGACUGUUAACUGUGUACUAACUGCAUGCUUCAGGCGCCAUUUGCCAUCUCCUUGUGUGUUGACAACUCCAAAUCUGACAGCUCCUGAGGUUGAUGUAAGCUGAUCUUUUAUCAACGCAAUUCAGGAGCAUGGAUUUCAAUAGCUUGGUUCUUACGAGUUGUUCAUGUGAGCAUAUCACUGUGUCAGUGCUUAGUCCCCUUCCAGGCACGUACAAAUGUCAGGGGAGAAAAGUUGCAUAAUCAUUUAUCCGCAGUAGGAAUAACUCUCCUCUGCAUUUCUGAAAAAUGUUAUCAGUACUCGCUGACAUGUCUGUUAUCAUGAGUUGUUCCUCCCUUUCUUUUUAUUCUUUCAGGAGAAAAGCCUGAGCUGAAGCAGUUCUCAUCAUAGUUUUCAGCUUGGAGUACUCAUCUUCCUUUUUGACCUCCGAGGAGAAUGAAAUUAUGCACAAUAACUCAAUUUUCAGCUUAUCCAUCUCCAUUUAAACAUGUCUCUCUCUUUGCCUUGCCAGAAGCAUUAAAAUCAUAUUACUGUUCUUUAACAUUUCAGGGCAUUGUUCAUGAACAAUCAUAUGGUCGUGCAUACAGUAUUGGCUACAGUUUUACAGCUCAGUUUCUCGACAAUGUCAGGCUCUGAUCCUGAAACUUUUUGAAACAUCCAUUUGCUUGCUGGUCAAAAGGUCCUUCCACUCAAAUCACACCAGCUGACAGUUUUUCUUUUCGAGAGUUCCUGAGUUCUCGAGUGCUGGGUAUCCUCAACAGCGCGUGCAUUUGACUUCAUUGCAAAUCCUCUUGCUUAUUCCUUCUGCCAAGCAUCUUCUUGUUCGUGCUUCUCCAUAAAUCUAGACAACCUAAGCCUGAACUUUUUCUUGGAUAAUGAAAUAAACCUAAGCAUGAUCAUGCAUCUCCGUUCUUUAUCAGACAAAAACUUUUUCUUGAGUUUCUUGUCGUAAUUCCUCUCCUUAAUCCAGCUCAUUUUGAUCCAGCACCAUUUUGUGGCUGACAGUGUGCAUCUCUUGUGUUGCAGCUGAAACACGCAAUUAAGAUCAACUCAACUGCAGCAACUGCUAUUAACAAAGGGGCUCUUACUCGUCUAAUCAUGGUCGUCACGUCUUCCCCUGAUGCAUCCAUCCGCUUCAUUAUUUUACAGGGGACGUGACAGCAUUGGCGGUGCCGGUGUUCGCUGCUCUGCGGCGUCGCCUCACCGUCAGAUGUGCAUGCAUCCACAUCAGGUGACAUGCAGAACACAGUUAACCCCGGUGAUGCAGAGAAAAAAGUUGAAAAUUGGAACUUGGACGACUAGUUUACAUGAAUGACUUUAAGGAGCUGAGGUGGUGUCAGCACAUCGAAGAUAAGUAUAAGCAUGGUGGAGCAGAUGCAGAGGCAUUUCUGUUGGCCUUUCCCACAGUUUCUGAACCAGUAAUGAGAAUUAGGCUUUUUCGGCAGGACAUGAAAGGAACAUUUUUCAGCAUGUCCACUGUCUCCACUACUGCAAGUUAUCUCAGAAAGGCCUAUUGUGGACAAUAUGAUUUGAACUGUUGAACCUGGUGUCUCCUCUCCACCACCCCACCCCACCUAGAGCUCAAAUUUCAGCUGCCGUUUUUCGGUGAGAAUGACUGAUCCAAGAGGAGAUAAAAGAGAGACGAAAAAAGGUUGCUUUUCUCUGUCAUGCUCCGAUUCCAUUGAGAAGAAAAUGUGCCCAGCACUACACCUAGAAUCUUGACAGCAUUAGACACGGAGAGAUGUGAAUGUGCAUAGCCUGUGUAUAUCUUUCCGACAGUAACGUCUUAGGCGACCAAACCCUAAAAUCUCCCAUAAAACCGUGGCUAAAAACAUUGCACAGGAACAGUGACAGGUACCACUCUAGGCCUGAAACUGAAGUGCCAAACUGUUCAGGUAAAGAAACGUAUCAACUUUUAUCGACCCUCUGAUUUUCAAAGCCACUGGUAAGUUCAGAAUUACAGAAGAAGCAUGAUAUUGUCUUAACUCCUAGUCCAUGGUAAUAUCUUCUGAACUGGAAUUAUACAAGGAAACGUAUGCACUUCAUCUCAAACUUUUUCUCACUAUAGAUGCAAUUGGUAAGGUUGUUGCUGGUUUCUUCAGAUCUGCCGAAUGAAACUGGGUAUUAUUAUGCUAUCUAAGUUGAAGCAUAAAGAAAGCCGCAUGAUGGAGAGUAUAUGUAAGAUUGAACCUUUUCUUUGUCACAACUAAGACUUGGAACAAUUCUGUCUGAAGACUUGAAAAAUUCUGUCUGAAGCUUUGUUAAUGUAUGUCUGAAAACUCAGGAGUUGACAGUGAAAACCAGGCGAACAAACCGCGGUAUGAUUCAGAUGUCGCUUCACAUCGAAUUCAGAUCAGCGCGCAAUUCAUUCAAAAUUAAGUUUGUAAUGCGACAUGGAUGGAACAGCCGUGAUGUAGACAUCAUUAGUUAGUAUUAGCCUUAAUAACAAUCAUGGACCAGUUAGUACUACGUAGUUACUGUUGGUCAAACGAAAAAAAAAUAACAGAUCACUCCUGCACGAACCAACGGCCGUGCGUUUUGUAGUAGAUGGUAGCAGUUGU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

467

LEP:

94.92%

ME_num:

24

MEP:

4.88%

HE_num:

0

HEP:

0.0%


Warning: Undefined variable $ncRNA_type in /home/www/html/RiceNCexp/browse_detail_info.php on line 222

Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.95

Avg Expression:

1.48

Tip: OSA-LNC107281755 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN5.695648412278621.43735501396534e-05
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN5.891518253798869.29768069084923e-06
3Baldo // root // control--/--Baldo // root // 100 mM NaCl2.503976778819130.00367341390306256
4Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl4.461761055805853.46521582121046e-06
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN3.894976291190980.00884999542436378