Chr:
Chr7
Start:
3533402
End:
3538185
Strand:
+
Ref_name:
LOC107281724
Sequence
(XR_001547484.2):
AUUUUUUUUUCCUUUUGUUCUGGUUCUUUUCUUUUUAUUUUCUUUUUUUUCCUGUGCAAUCCGUUUCCGGUUCCGUAUGUUUUGCCACGUGCCGUGUACUGAUGGGCAUUGAGAACAACCAAUCAUUUAUUAAGAAAUCACAGAUUGGACCGUUGCAUCAUAUCUAUCAUUGAUUUACAAUCAAACGGCUGAGGGAGGCCUGUGAAUACGUGGCACAUCAUCAAUCAAUAACUCCCCUAACCAUUCCUUUUUCUUCGGUUUUUCAAUUUUUUCUGGCUAUCUCAUUUUUUACACGUCUUCGUUUUGUGUUUAAGGCUCCUCGUGCGCGCGAAUGUGACUGGUUGUUCGCGGUUCCCACGGUCAUUUCUCUGUUUCCAUAGACAUGUAUCCCCUUCGUGUCCGGUGUGAUUAACAAGGAAUGGGCGGUUGAGGCAUGCAUGCAAGCCACACGCACCCCACUUGUUUUUGCAGAAAAAACCUAAUACUCUAAGAAAUCUUGAAGCAAUCCUUCCACCGUUUUUACCUUACUACACUUUUUAAUGAAAGCCCCAUAUACUUCUGAGAAAUAUAACACGAAAAAGAGAAAAUUCUGUUUUCAGGGAUGGCACUGUAAUCCAAGGAAAUACAAGGGUGUUUUUGCAAAAACACAUCCAAAUCCUAUCUCCUGCCUACCCAUCCCAACGCCGCCCGUGGACCGGCGCCUCUCGCCCUCCUCCUGCCAUCGCCGCAACCGCUGUUUCAGCAUCUCCUCCUGGUGGCUGGCGGCGCUGCCCACCUAAGCGAGGCUCCCCUCCAUGCCGUGAAGGCGGCGACAAGGCAGCAGGGCCGCACGCAAGGCCAGGACGGCCGCACGCGGCUACUUCGGCUGGGGUUGCAGGGAGAUGACGUGGUCGGCACCGACCACCCAUGCCCCACGGCGGCGUCGGCCCUCCCCCUAAUCCUCCAGCACCAACCUUCCCCCUACCCCUUCCCUCUGGAGGCGAAGUCCUGCUUCGCCGUCGUGGAACUUGACGAUGGCCACAUAGGCGGGGAUCGGGGAGGCCGCGGUGGCACAGGAGUCGACGAGGUUGGUGGCGGCGGAGCACGAGACUGCGGUGGCACGGGUGCCUUCCGCCGUCCCUCUUCCGUGGCAAAGGAGCGCAUAGGCAUGGCGUCCGUCGGAGCCGACGCCCCCUUGUCACGAUUCUAGGUCUUUCUCGCGAAGGAUUUGGUCACCAAGGAGAAUUCGAGAGAGAGAGAGAAUCGAGAGGGAUUUGUUGAGGAAGAAGAGGAAGAUAGAGGAGGAAGACGAUAGAAGCAGCAGAGAUAUUCGAAUUGAGUUUCUGUUUGUUGAUUAUAAUAAUACGCCUUCUCUCUAUCGCUGCUGGCCUAUAUAGCAAUACGCUAUCAAGCCUCACUCACUAGCCGUGGCCCAGCCGAUAGUUACUGGGUCCACUCACUCGCUGGAAAGCGCUUGUCGGGCUGUCAUUAACGAAUGGGCCGACCCCCCGUUCGGCCCAUUGCUUCGUGAUUUGAAUUGCCCGGUUCUUGAGCUGCUGCUGCCGUCGUGACACCCCUUCACCACAGGCCACAUGUGGUGGCAAAGGGGUCUGCUGCAGCAGUGAAAUCGGCCGCUCGACCGCCGCCCGUCGUCUCCCCUCUUCUUCUACCCCCUGUGGCGGCAAAAGGGCAUGCUGCAGAGCCGCCGAGAUGCAAGUCCGUCAGCGGUGGCAGCAGCGGGGCUGGCGUAGGUGUCCCCCUCCCCCGCGGCCACGUCUGGGCCAGUGGCGGUUUGGGGACCGUCGCCGGUGUCCCCCUUCCUCCUCCUCUCUAUCCCCCCGCGACGGUGUUGUGGCCGGUGACGAUGUUGGAGCCGAUGCCUGUGUCCCACUCUCCUCGCGGCGGCGUUGUGAUCCGCGGCGGCGCUGUGUUGUAUAAUUUACCUAUCAUUAUUGAGUAAUCAUAGUACUUAGACCAUAGUUAGUCAUUCGUCGUUGUUGCAUGUACAUGUUAUUCAUGAUCAUCACAAAAUGAUCUUUAGUCAAAUCAUGAAUUCUUUGGAAUGUGUGAGAUCGGUUGUAUUGUACGAAUUGGUACUUUCUAGCAGUCAGGCAAAGUACUUUCUUGUGAAUCUGGAUGAUAACAUGAGUUUGAUUAUCUUAUUGUCCUUCUUUAUCUUUUGUGUGCUUUCUGCUGUGUUCUUAAAGAUGAUGAAUUUACUCUUAACGAUGGUCAUUAUCCAUCUCCCUUUAUCUCCCUGUCAGCAUUUCACGUUCAUAGUAUUGAACGCAAUCGGUUGCUUGCUAACUAAUGAAAGUUCGGUAUUUUUGUUCCAGGGUUUUUCUGUCCUGCACUAGCGAAAGCUGUCAAGAUCAUGAAAAGAAGCCAUAAUGAUGGCACAAUAUUUUCGAAGAAGGGAUAUGAUGAACAGUAGCCAUUUGAUUUCAAGACCGAUGAAGAGGAGGCUAUUGAGAUUUUUAUUGGGAGUCAGAGCAAAGUAUUUUAGAGCCACCUUCAAAGAACGUUGUCAGCUGCAGCACUGGUGCUGUAAGAUAAACAAUGGCCUUGUGAUUCCAAAAGAUGUUCUUUGAUGGACUUAUUCAUUUGCUACAACAAUCAAGUUUAUAGCAGGGACCUUCUAUAAUCCUACCAAAGGCACCCUUCAAUUCAACAAUUUGAAUCAGCCAAUGAAAGCCUAUUAUAUUUGUUGAGCUUAAUUAUAACAAGUAAAGAAUCUUGCUGCAUGGAUUCAGAUGGUAUUGUAUUUUCUGUGCUGCCCUGAAGGCCAGAUGAAGUUAUUGCUAACCAGACAGAACAGUUACUAUCAUGAAGUUUUCCUGGGGCCACAUGAAGACCGAGUGCAUGUUGAUUCUUAUCUGGGUUAUGUUCGACUCGGCCCUCACCGUGAAGAUCAUCCUUGGAAUGCUGCUCACCGUGAUGGGUAUGGUGGUAUUCAUGCAUAUUAGCGAUCUAUAUUAUCUUUUUUUCAUGCAAAAUAUGCUAUGCUACACAUGGAUUUAUCUCUCUUUAGACCAUUGUACUUUAGUUCACAAAGCUUGACUUAAAUAUCGUUGUCAAUCUUUCUUCUUUUUUGCAGCUUUUUUACUUCUUCCUCCUUUAGUCUUAAAUUGCGUGUGGUCCAAUCACAUAGAAGGUUGAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
27.24%
ME_num:
MEP:
58.13%
HE_num:
HEP:
14.43%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.73
Avg Expression:
4.80
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.33250431700401 | 3.96134216194463e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.32534425951212 | 0.000369458357734188 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.79498317856399 | 0.00329424733809133 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.50645449332599 | 0.00204947078608182 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.98750970887401 | 0.0097129937150135 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.68632539475861 | 3.46740286320072e-05 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.22574413159443 | 1.79581873711522e-09 |
| 8 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.0488641089895 | 0.00438813146844181 |
| 9 | 9311 // leaf // control--/--9311 // leaf // salt | 1.86725813672325 | 8.60646239875429e-08 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.16751121184137 | 2.12560680987756e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.53259304699662 | 0.00015054668489915 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.93441161437737 | 3.40913396263008e-21 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.99634477415268 | 0.000227078378000108 |
| 14 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.70714150963216 | 2.37998191587785e-08 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.33551220620004 | 2.7920288979271e-05 |