Chr:
Chr7
Start:
14490505
End:
14491483
Strand:
+
Ref_name:
LOC107281723
Sequence
(XR_001547483.2):
AUGAUUCAGUUUUACAAAAUCAAUCGGUUGUCUUUUGGGCUAAAUAAUGAAAAACUAUCGCCAACAGAAUGUGAUACAACGCCAAGUCAACCGGCCCAUAGGAUGGUAGUUAAUUAACAUGUCAAACUUCCCCAGUCGCAGGUUGAGGCUGAUCUCGCCAAUGAAGGAGCGGUAGACCAAUUGGAGCUCCGCCUUCUUGGCUAAAGCAAGAUUAAGAAUUAAACAUGUGUAAUAGAAGUAUCAGGAAUUCAGAAUGGUAGUUGGCGCAUAUGGAAUGGAUUUGAUGGCCGAAAAUUGUGUACCCUGUGAAGAAUUAAUUACUGGUUUUAAGUUUUAACUGCAUACUGUUAUCAUUUCAGGGAAAGGUGAUCUUCAGAAGAGCUGAGUAAGGCUGCAGCAGAAGGUUCAUUUUCCCUUUUGUGAGGUGCCAUAACUUUCUGGUGUCUGUUGAAGGACAAAGAUUAUAAAUGACAUAUAUUGCAGGAAAAUGACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
67.89%
ME_num:
MEP:
26.02%
HE_num:
HEP:
5.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.72
Avg Expression:
1.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.98151433273137 | 2.17117260157216e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.47056485277938 | 0.0109024618806972 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.93432876617091 | 0.00155068205175648 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.88226425988909 | 5.78429003371497e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.78754436491688 | 0.00197201426479035 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.20215608803651 | 0.0213943037038561 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.59743469258409 | 6.75553064309536e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.357649823617 | 0.013501607030815 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.01184197426555 | 0.0175685279470732 |