RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107281717

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

9350780

End:

9352228

Strand:

+

Ref_name:

LOC107281717

Sequence
(XR_001547476.2):

AUGCCACUCCACUCCCUCUUUAGACUUGCAAACCCAAUAAUCUAGGCUCUAAUAAUCUAGGAAAGAAACAACUAACCACUUAUUCUCUACUACGAUUAUAACAAUCUAGUUGCUAGUAAUCUGACUGAACAAUCUAGAUUAUAAUAAUCCUAAUCUAAAAGAAACAGGGCCUAAAUAUACAAAUUUAUAAAAAAGAAAAACUAAUGCGAAGCGUCGCACCGCUGUCGUCGUAGGGUUUUUGGGUCGCGCGAUAGAUCCCACCGCCCGCGUCUCGCAACUAACCUAGCGAUCUAAUCGGCGAAUUACACAGCAAGCAACAACAGGCCAGCAAGAUACAAUCCCAUCGUUCCGAUUGAGUCCACGCGCGCCGCCGUCCCGCAUCCAACGUCUCCCGUCGGCGCGAGACCACAACGGCGCCGGCCGUCGGCACGCCGGUACGACCUGCUGACCUCGACUAGGCGACGGUGAGUGAAAAAAGACUCAAAACAGACUGAAGCUCCACCAUGCAUAUCCUUCUAUGUGCACCUCUACUGCCCAAAAAGUAUGUUUCAUCUUUUCUAAGAGUGCUGGGAUGUGCAUGCCCCUUGACGCCUUGAGCCAUUCCAAGGUUUUUAUGAGAUUGCUGAUCGUUGAAUCAUGAAGAAAGAUACACAUAUUGUCUCUCUUUUUCGAAAACACGUAGCAAAGAAGAAUGCUUCUAAAUUGUCUUCUUUCUCGGUUGUGAUAAAAGAGCACACGCAAGACAAGAUGAGGAAGACAUCUCGCCGCUUCCACCACCGUUUUUCGUCAUGGUACACUUUUUGGUAUAUUUUAUUAUCUAUACUUAUAUUGUAUAUAUUAGCAUCGUUACAUUUACGGUGUUUAGAAAAAAAAAUUUUAAGUUGGACCGCCCAUAUUCUAAAUCCUAGAUACGUCAUUGGGUUUCUUCGGUAUGUUAGGCAUAGCUAGGGCUGCUUGCCACCAUUCUUCCAUGGUUUUGCAACUAUAGUCCAACUUGGUGUGAAGAUCUGAACUUGGACCCAAUUGCCUACCACUUCCUAGAUUCUCCGCGAGAGCCUGCAUUCAGCUAGAAGAUGGAUGGUGGAUUCAUCGAUUGCUCCGCACAAAGGGCAUAUUUGCUGGUUUGGCCAACCUAUCACGUGUAGCCUAUCCACUGUCCACACUGUUUUGAAUGAUUAACCAUGAGAAAAACUUGCAUUUGUUCCAUAGGAUCUUGUCAUGUUAUUUUUACUACUUCCUCUGUCACAUAAUUUAGCAACCUAGUAUCGGCUCGGUUGUUA

Sequence
(XR_001547477.2):

AUGCCACUCCACUCCCUCUUUAGACUUGCAAACCCAAUAAUCUAGGCUCUAAUAAUCUAGGAAAGAAACAACUAACCACUUAUUCUCUACUACGAUUAUAACAAUCUAGUUGCUAGUAAUCUGACUGAACAAUCUAGAUUAUAAUAAUCCUAAUCUAAAAGAAACAGGGCCUAAAUAUACAAAUUUAUAAAAAAGAAAAACUAAUGCGAAGCGUCGCACCGCUGUCGUCGUAGGGUUUUUGGGUCGCGCGAUAGAUCCCACCGCCCGCGUCUCGCAACUAACCUAGCGAUCUAAUCGGCGAAUUACACAGCAAGCAACAACAGGCCAGCAAGAUACAAUCCCAUCGUUCCGAUUGAGUCCACGCGCGCCGCCGUCCCGCAUCCAACGUCUCCCGUCGGCGCGAGACCACAACGGCGCCGGCCGUCGGCACGCCGGUACGACCUGCUGACCUCGACUAGGCGACGUGAAAAAAGACUCAAAACAGACUGAAGCUCCACCAUGCAUAUCCUUCUAUGUGCACCUCUACUGCCCAAAAAGUAUGUUUCAUCUUUUCUAAGAGUGCUGGGAUGUGCAUGCCCCUUGACGCCUUGAGCCAUUCCAAGGUUUUUAUGAGAUUGCUGAUCGUUGAAUCAUGAAGAAAGAUACACAUAUUGUCUCUCUUUUUCGAAAACACGUAGCAAAGAAGAAUGCUUCUAAAUUGUCUUCUUUCUCGGUUGUGAUAAAAGAGCACACGCAAGACAAGAUGAGGAAGACAUCUCGCCGCUUCCACCACCGUUUUUCGUCAUGGUACACUUUUUGGUAUAUUUUAUUAUCUAUACUUAUAUUGUAUAUAUUAGCAUCGUUACAUUUACGGUGUUUAGAAAAAAAAAUUUUAAGUUGGACCGCCCAUAUUCUAAAUCCUAGAUACGUCAUUGGGUUUCUUCGGUAUGUUAGGCAUAGCUAGGGCUGCUUGCCACCAUUCUUCCAUGGUUUUGCAACUAUAGUCCAACUUGGUGUGAAGAUCUGAACUUGGACCCAAUUGCCUACCACUUCCUAGAUUCUCCGCGAGAGCCUGCAUUCAGCUAGAAGAUGGAUGGUGGAUUCAUCGAUUGCUCCGCACAAAGGGCAUAUUUGCUGGUUUGGCCAACCUAUCACGUGUAGCCUAUCCACUGUCCACACUGUUUUGAAUGAUUAACCAUGAGAAAAACUUGCAUUUGUUCCAUAGGAUCUUGUCAUGUUAUUUUUACUACUUCCUCUGUCACAUAAUUUAGCAACCUAGUAUCGGCUCGGUUGUUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

425

LEP:

86.38%

ME_num:

66

MEP:

13.41%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.88

Avg Expression:

1.04

Tip: OSA-LNC107281717 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-1.907701480686310.0410587593108829
2Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days"-3.336696685499850.00426338837086002