Chr:
Chr1
Start:
14321062
End:
14323329
Strand:
-
Ref_name:
LOC107281710
Sequence
(XR_001547471.2):
CGAUGAAUCAAAGUUCAUUUAGACGUUGGUAUCAAUUUUUUAUUAAGAAAACUAACUAACAGAGUGUCGUCCAGGGCACGGGAUCCUUAAUGCGAAUGCUCUCACCACCUUAUUUUCCCCACACACAGAUGUGUCUACGCUUCCUCUUAUCUAUACCACACAUAUGACCUUCUCUCUCUCUCUUCUCUCAUUCUCGUUCCCUUCUUCUAUACGACGCCGCCAGUGCUAUGAAGCUCAAGCAUGGCUGGGCAGCUUAGGCAUGGCAACGUGUCCCUGAUCGGUCAACAAAGUAAGGCUCCGGUGAGGCGGCGAGGUCGAUGGUGAGGUGGAGCAGCUAAGCCGUGUGGCUAGUACAAGAUAUCAGGUCUAGUAUCUAUGGGUGGUAUGGUGCUUGUGGGCAUCAGAUCCACCCUAGUACUAGGUCUGGUGCAUAGGUAUCCAGCAAUAGUUCUCGUGCCUCAUCGGUGAUGGGCAGAGAAGUGGCUGCCGCAUGCAUCCACUAACCCGAAGCACACGGCUGAGGAACGAUGUCGAUGCAUCAGGGGUUGUGGACAUAGAGAGGGAGGCACAUGGCGGAGACGACAAUGAGUGUGUGGUGGUGGUGGCUGCCGCACGAUGGUGAUGGCCACCCUAGCAAUGCACACGGAUAUUGGGCGGCUGAAUCUCCAACAUGUCACGAGCCUACACAAAAUUUCAUCCGAAUACCCUGUGAUUAUUGACGAUUAUCAGGCAGGUUCUAUUCAGAACAUGAUCCAUUGUCACAGAGUGAAGCCGAAGUUCCGAAGAUGAGUGUGAAACAGUGAAAGGCUGGAAGAUUUUGUAAAGGGAGUGUUCGGCUUGAAGGAAAAAGUUCAAGGGCUCACAUAUGAAGGUGGUGUUUAGAUCCAGGGGUGUAAAGUUUUGGCGUGCCACAUCGGGUAUUAUAUAUACUAUCGUAUAGGGUGUUCGGGUAUUAAUAAAAAAACUAAUUACAGAAUCCGUUAGUAAACUGCGAGAUGAAUUUAUUAAGCCUAAUUAAUCUAUCAUUAGCAAAUAUUUACUGUAGCACCACAUUGUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
80.28%
ME_num:
MEP:
12.2%
HE_num:
HEP:
7.32%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.94
Avg Expression:
10.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -5.20825919322215 | 0.038992837546095 |
| 2 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -4.13396818510785 | 0.000778958589557206 |
| 3 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -4.13400157154208 | 0.000785297060871122 |
| 4 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -4.13413580698358 | 0.000781861981408731 |
| 5 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 1.76675625664429 | 0.0361696183098253 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.37959187045747 | 0.0404871204334821 |