Chr:
Chr7
Start:
27817795
End:
27819381
Strand:
-
Ref_name:
LOC107281708
Sequence
(XR_001547470.2):
CCAAUUUUAUAAGAGUAGAGUGGCAUCCGACUGAUUUGACGAAUAGAAAUAUUAUUUUUCUAAAUAAGUGAAUUUGUAAUGGCAUGUGUCUAAUUAACCCUAAAAAGAAAUAAGCCAAUCUUGAGAUAUAUUUUAAUGUUUAAAUAACUACCAAUGAUUAUGUUGGGGUUUUUUUUAGAAAAUACAAAAAAUUAUCAAAUUAUGAUUUCCCUAUUUUAGAAUUUUUGUGUUGAAAUGUUUUUAUAUGCCAUGCUCAUGAGCUAAUCAUGUUAUUAUCGGAGAUGGAUAUCUGGUAUCUACCUCAACUUCACAUAUCACAAGUACAAUGGACCAUAAUCUCUUCAAGAUCCAGCUUAUCCAAGUCCUAAUCCUUCUUGUAUCAUUGCUGCUGUCUACUUGCCUUCCAUGAAUGAUCCUUUGUUGCUGUGAACGAGCUAGAUAGCUACAUACCAUCUUUCUGUAAUGAAAACCGAGAGUAGUUUACGGAUCAGAACAAGGAGAAGUGUAUGGAUUAAGGGUCGCUGAAGCAGCAUCAAGCAGAGAAAUCGGUAUCAGGUAACAUAAUGACACUGAUGACAGAUGAGCUGAAUGAAGUUCAUGUUGCUACUAAACGAAUAAUGAGAAGGCAUGGAACACCAUGAUGUUGUGUACAGUUUGAUGAGAGCUAUGUGAAAAUUAGCCUAGUUCAGUUGAUUGAUUGAUCAUUUGAUGCGCCUGGCUAAUUAACAUUCAGAAAGUUGGACUGAACUGAACUCUGAACAAGCUGGCUGACUUCAGCCAUGCAUGCAUUUCUUGGCAAAUUUUCUCUGCAAUUUAUCCCCGUUAUGUGAGCUGUAAUUAGAUCAUGGCCAGAGACCGGACAAUGAUAACAGAUAGCUCAUCUUUCUCUGAAGAACCAGCAGCAGAUUGGAUCUCCUUAUCAGACUGUCUUUCAGAAUUGGUUAGCCUUGCAGAUGUACUAAAUGACUUGCUGGGACAUGUUGAAUUGUUUAUGAGCAGCAUAUUUAUAUGCAUGAUUGCAUUGCAUCAGAGACCUCACAUCACUUGGUAGUUGGUACCUUUAAUUUGGUUGGAAUGACAUUUCUGUCCCAGUAAAAUAUGAUUAACAAGAACAGUCUGAAAGUUUUUUCUUCACCUUUUUGAGAACUCUGCAAGAGGAAUUAUUCAGGAUGACAGACUGACAGUAGGACACUGCUUGAUCGCUUUCAGAUGCUAUAUGCUCCUAUCUUGAGACUGAAGAUAAGUGGGAGAAAAACAGCGUAUUUUCUUGGAUUAAUAACUUAAUUCCAUUACCUACCACUUAAUGUCUAGUGUUGAGUGGAACUAAAGUAUGGUCCUUAGCUGCAUCUUUCGGUUCCUGUGGCUUUACUUACAAGGCAUGACUCUGGUUUGUUCCAAACCUGUGGCUUACUCUUUUCACAAGUCAAAAUGUUUUUCCCCCUGUAAGAUGUAUGUUUUGCCUUCUUACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.68%
ME_num:
MEP:
7.11%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.89
Avg Expression:
0.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.13406850976042 | 0.00332737992530069 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.23460980603367 | 0.00191684884437236 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.55413381789561 | 0.0213344497491784 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.38300412479208 | 0.0241463933739757 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.67033726755409 | 0.0362039607947985 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -5.22271627985472 | 0.00439141751990209 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.4941801243016 | 0.000851399166377376 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.21689193370458 | 0.0184710604081201 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -5.10067510755801 | 0.00422790412773559 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.19723250710059 | 0.00154580663119568 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.71281238964057 | 0.00316014358821642 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.14729816115945 | 0.0446395499223062 |
| 13 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.82365607648051 | 0.0414959488639807 |
| 14 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 4.94410977276587 | 0.0157734415342104 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.08971212732406 | 0.00345200921345574 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.95833347849971 | 0.00467778117750272 |