Chr:
Chr1
Start:
17600255
End:
17602247
Strand:
+
Ref_name:
LOC107281700
Sequence
(XR_001547463.2):
AUGAUGGGAUUAAAAAGCAUCAUGACGAUUUAUCUUUGUUAAUAAAAGCCCACACUUGCAAGGAGGAGAGAAAGCAAGAAAGAAAAGACCAUAUACACGUGUUUUGUCCCCAUAAAAAAAGCACAGGAAAAAGAAAGAUACACAUAUCACGCCUCUCAUAUGCCAGCGUCACCCACAAUCAUCACCCGUCCACCACCUUGCGAUCCAAGAAAGAAAAAAAAAAGAAAACAAGGGGUCAGCUCAAUCGGGAAGGAGUGAAUAUUGUGUGCAACGAAAAAAUCUCCAUGGAUGCAUCGUUGAAGAUGAAGAGAGAUGAGAAGAGAGGCGAUUCAAUGCUGAAUAUUGGGGAAGCCCUAGGUUGGGUGAAAGACUCACAUAAAGAAGAUUAUGUAAUGGCGGAUAUGUAUGAUCAACAGUCCUUAACGAGACAUCAGCAGGUUCAAAAUAAAUUGUGAUUAGAGUUUACAUCAAUUUGCACUGGCAGAACAUGAAAAGUUUACAUCAAUUCAGCUAUCUCAGUACAUGUAUCUACAAAACUGCAGCUAAACUGUCUAUUGAUAAAUAUCCAUGUAUCCAGUGAGAAAUAAAUAUGCAUCUUGGGGGCGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
78.66%
ME_num:
MEP:
17.89%
HE_num:
HEP:
3.25%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.94
Avg Expression:
4.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.54844807851906 | 1.12378675541887e-13 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.39584705224109 | 1.24835771390018e-12 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.35323186738433 | 6.91005089031718e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.75803868631503 | 4.68245641511251e-07 |