Chr:
Chr7
Start:
24641972
End:
24643445
Strand:
+
Ref_name:
LOC107281677
Sequence
(XR_003243342.1):
AUCAAGAUUCUAGAGAAGAGGGAGAACGGAGCGGGCGGUCCUCUAUCGCUCGGCUAAAGCACAACGUACGAGAGAAAAUAGCCCGCUUCCAGGCGCUAAGCCGCCGCUUCGUUCCUCCCCCAGAUCCCGUGCAUCUAUGCCGCCGCCCCCAACCUCUCUUCCUCCGCGCGCCAAAUCCCCCUCUCUCCUGCUAAAAUCGAGUCCUCCCGCUCCAAUCCGUCAUAUAACCCUCCCAAAUCCACUCCCAUGCCACCAAAUUCGUCCCCAAAUCGCCUCCUCUCAAACCCUAGACCCCAAAUUCGUCCUCAAAUCACAUCAAGAUGAGGUGGCAGUCCAAAAGGACGUUUGCACCGGCAUCACUGGAGGUCCCGCCGCCGGCACUAACACAACAGUCCAUGGUGACCUCCUCCUCACCAUGCUUCUCGACGGGUUACAACAACCAGGCAUGGGGAGUGGAUUCUCACCCACUCGGUGGGUUUCUUAAUUUAUUGAAGAAAAACACACCAAGUGGUGCACAAGUUGUGAUCAAUGGUAGUUCAUCGCAGUCAAUCAAUGUUGGCGAUGACACCAAUGUGGCGAUUGCCGAAGACUUAUUUGCCAGUAUUUUGAUUAAUGCUUUUUAGAAAGACUCAUGUAAUGUUUAAGUGGUUGUAUCAUGAUGCUAUAUGUUAUGUGCCAUUGGAUUAUGCUGGCAAUGUUGCUUGAAAACAGUAUCAUCUGGAUAUUAAAAUGACCAAUGUUGCUUGAAGUUGAUUUGUGAUAUGCAUGGAACUCAUAAUUAAUCAAUUAUAUGUUUUCUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
58.33%
ME_num:
MEP:
27.85%
HE_num:
HEP:
13.62%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.84
Avg Expression:
11.33
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.99554045705898 | 0.0452044723044118 |
| 2 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 2.78342825625688 | 0.0140173913350607 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.75821224855391 | 0.0210598316956394 |