Chr:
Chr7
Start:
7503475
End:
7504824
Strand:
-
Ref_name:
LOC107281669
Sequence
(XR_001547430.2):
GGUCCAUAUAUUAGAUGAAUACCCUCGAUACAUAUGAAAUAAUAUCUACAAGUUGAUUUGUAUUUUGUAUUCUAAACCGAUGACAUCUGCAUCAGACCUAGAGCUUCUCGUUGCCUCAACGGCCGGUGUCGCAGCCGUCGGAUCUGGCGGCUGGAUUUGUCUGCGCCAAAGGUGUGCUUGUGGCGCCUCCCUACGCGCGUAGCAUCGGUGAGCUUUUGCACCACCCUCUGCACCCGGCCGACGACGGUGAGCACCCACACGUACAUCCCUCCGAGCCCUGUGCCGAAUGCCUAGCUAGCUCUCUCCUCGAUCGGCUCCUCGCUGCAGGCCUUCCUCCGCCGAUCGAGAGCAAUCUCCUCGCCACUCGUACGCUUCCCUCUGCACCUGUGCUGGCAGCUGCCGCACGUACGCCUCUGCCGCCGCCGCCGCCAUUAUUCGAACCCUCCCUAGCGUACAUGCUUUGAGUGUUCUGGUUGAAGUCAAGACAGCGAGCGCCCAGAGAUUUCAAUCCCAUAUAGGAAAUCUAAGGAACGGAGUCCUGUAAAUACAGAAUAACUACCAAUACUCGUAAAUAUCUAUUCAAUCUUAUCCGGCCUAUGUUAUCCUCACACCACCUAUUCAAUCUUAUCCUCUAUGUUAUCUCUUCCCCUUUCCUCCUCCUCUCUCUCUCUUCAACUAUCAUGUGCACGGAGGCAAUGGUAGUGGCUGGCCAUGCAGGGAGGUGUGUUGGGCGUGGAGAAAGCUACCGUCACCGCCGUCGCUGCUGGUGGUGGAGGCAUGGGUGUAAAGGAGGAAAUCGUGAAACUGUUUGUGGGGUAGGUGCCCGGCCAAGCAAAUGAUGGAGGCGAAGCUACUCACCACAUUCUAGGAGGUGGCCAUCGUCGACGAGAUCACUGACAUGAAGGACAAGGCCUCUCGAGGUGUGGAUCCGUAUGACAGAUUUGGGCUCAUGACCCCAAAGCACUCAUGUUGGCUUUGUUUUGGUGUUUGAUUUGGGGCUUUUUACAUAUUCUAUGGGUGUUUUUAUAGCUAUGGCAACUUUUUUCUAUAAUUGAUUUAUUUUGUCGGUUUUUAUUGACCUCUCUCUUGAUAAAUAUAUGAUUUUUUUGUUCUUAUUGCGAUGAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
61.59%
ME_num:
MEP:
29.67%
HE_num:
HEP:
8.54%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.81
Avg Expression:
3.43
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.78658063448749 | 2.67948835063598e-09 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.09661723881351 | 0.0488392176948106 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.60943595728962 | 0.0249936118339372 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.18722184308075 | 0.0423462264509214 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.77250413448067 | 0.0342797327257468 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.35360747874785 | 0.0125286209326924 |
| 7 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 3.52320645188914 | 0.0246915283893392 |
| 8 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 3.52313846568627 | 0.0247691074470082 |
| 9 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 3.52294900404498 | 0.0247521908447422 |
| 10 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.46825137757278 | 1.06371778600739e-57 |
| 11 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.44545733826427 | 2.2942737529709e-09 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 3.25809363203691 | 0.00855961686237956 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.10873853969845 | 0.00185881791457185 |