Chr:
Chr7
Start:
10991862
End:
10992798
Strand:
+
Ref_name:
LOC107281664
Sequence
(XR_001547419.2):
UCCUGAAAUUGGCGAACGGCCCAUAUCACCUAACGAAACCCUAACUCUCUCCAUCUUCCACUCAGUCACUCUCCGUCCUCUCCUGUCGACGGCGGCUUGCAGGCUUGCAGCGGCUGCUCAAGGAGGCAGCAGCAGCCGCGACGGCGGUUGAUCCCGAAGGCGGUGGCUAUGACCUGCAGUGGUGGCGGCUGCUCCCGAAGGUGGUGGCUGCGACCUGCUGCGGCAACGGUGGCGGCGGCGGCGGCGACUCCCAAAGACAAUGGAUCCACCAAUCCCGGCCCCAAGCGACGACUGUGACAGGCGGCGGCGGCAGCUGUUGGUGUUGCAAGCGGCGGGCGGCGGUGCUUGUUCUUGGCCUCAGGGUGAGGAGUAUGGAGGUUCUUGAAUUGUUUUUUUUUUGUUCAAGUUCAAGAAUUCAUGGGGGAGGAAUUCAUUGGCAUGUUCCUCCUGUAAUUUAGCAAGAUGAUUCAGGAAGUGGUGAGGAUUUGAUCCUACUGAUUAUCAAGCAAUUCCUCUCUCCCUAGUCUUCUCUGCUUUCCCCAAGUUAAAUAGCUUUCUCUUCCAUAUAACUGAUUAUCAAGUUAUUUAUGUCUAAUUUUUGCAAAAACCGCUAAAUAGCUUAGUUGCAGCUAUAGCCAGCUAUAGCUGAUCAUAGAUGAUGGAGAACCUAGCAGCUAAAUGUCUUAGCCGGAGAUUUAAAUCCUUGAUUGUAAUUAAAUGCAUAUGGUUCAAGCAGGAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
50.81%
ME_num:
MEP:
45.53%
HE_num:
HEP:
3.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.78
Avg Expression:
5.36
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 6.54727532191835 | 0.000224251666828149 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.50869722185264 | 0.0202114744123522 |