OSA-LNC107281552


Function Link


Basic Info

Chr:

Chr7

Start:

3890330

End:

3894276

Strand:

+

Ref_name:

LOC107281552

Sequence
(XR_003243576.1):

AAAAUUAAAUGUGUAUUUACAAUUACAUGUGUAAGUCUCAAAAUUACAUAUGUAAUUAGCAGGAUGUAAUUAUGGUGUAACUAAAUUAAUAUGAAGUAUCAAUCAUUACUUUGAUCUAUCUGUCAAAUCAAUACGCCUGCCUAGUGUUAUAGUGCUAGAGGAUGAUAAGGACAAAGCGCAACAGAGUAAAGAUGGCGCACCCGAGUAAAGAUGAAGAAAAUCAGUAAAGCAUGUGUGGCUAAUGCCACGUGAGCACGAAUCUCCGUGACAAUCCUAAGGCCAAACUGUCGCCACAACUAUUGCGAAUCCGUUCUAUAACAUGCCCACCAACCCGCGAUCCCGGCGCACGCACAACUGUCUCUGCCAAUUCCGCCCGCCGCCCCUCUCUAAGUCUCUACUCUCUUCCAGUUCCGCUGCCGGUCGCCGGCGACCUCUCGCAAACAUGGAGAUCGCCUCCUCCCCAGUCGUCCCAGAUGGAGAUCUUCCGCCGGUUCCCCACCAUGGACGUGCAAGCACUUCGCCGUCCAUUGCCGUUCAUCUGUCACCUCCCUCGUCUCCAGCAGUUGUGCCAUCGACUUCUGCGGCAGCAUCUCCUCAGCCAUCUGUUUCACCUGCUGCAGCGUCGGCUCUUUCACAAUCUGCUCCAGCCUUGGCAGCUGCACCUCCACAACCACCAAACGCAGAGUCAACAGGGCAAGCGAAGGAGGAAUCCACCUUGGCAAACCUUCUGUUGUGCCCUAUCGAGGAGCCACCCCGCCCCGCCUGCUGCUCGCGUCGAGAGGCUUCCGCCGCCGCCGGAGUGGUCGCCGCGCCGAGGAACCGCCGCCGCCGCCGCAUCGAGGAGUUGUCGAAGCGACCUGCUGCUCGAUCGCGUCGAGUAUAUGCCUCCGCAUCAGGGAGUCGUCGCCGCGACCUGCUGAUUUCGUCGAGGAGCCGCCGCCGCCGCCGCCUGGUGCUCGUGACGCCGCGCUAGCAAUGGCCGGAGCCACCGUCGCCGCCUGCUCCAUCUCCCCAUAGGAUUUUGGAAUGGGAACGAUGGGGUCUUGGGGACACAUACUCAUGGGUAGAAGAGUACUCCCAUAUUUCUUAAACCAUUUUUUUUCUUUUCCAUUUCUAUUUCUUUUAACUCAAUACCAUGGGACCGACCUAACUAUCAUCUAUAGUAGGGGCAAACGGUUACUUCAUUUGAAAAAAAUAAAAAUGAAUUCGUAAAAUUGAAAGUUAGGGCAACACAAUUCUUCCUUCUUUAUAUCACACUCAUGCAUAUAAUCGAGUUAUAUAUCUACUGUUCCAGGGAUCAUUUACACGAGAGGUGUUUCUGUUCACCACAUCAGGCAGCAUCUUUGUGGGACUCGCUGCGCUCACCAAAGUCAUCACCAAUGGCUGGCCGCCGGUUGCCAGGACACUCUUCGCGCCAUUCGCUGUCUGCAGGGGCAGAUCUAGAAAAAUAUAGUAGUAGGGGCUGAACAAACUACAUCAGUAUAAAUUGAACCUCUAGUCUCCAUAUCCUAUAAAUCUAUGGGAAAAAUAUUAGUGGGGGCUUAGGGGGGUCUCCACUGUCCCGGGGGCGGUAGUGGGGUCUCAAGACCCCUCCGCCCCCAUUGUGGAUCCGCCCCUGGCUGUCUGCGUGAUGAUCCUUCUAGCAGCAGGCUCGAUUGCAACCACCACCAUGUCAGACCGUCCUAAACUGCAUUUCCUGGCGAAAGUUGCAGCGAGACUUUCCCUUAUUCUAGCUAUCAUGAUGCUAGAGAUCCCAUUCAUUCAGAUGGCUGCAGGAUUAUCUGCCCUUGUGUUCGCGCCGAUUCUUAUGGUGAUUACGCUCAUUAUACUGGGAUGUAUCUGGUGGUGGAGCGAGCCUGAAAUUGUGUGCAGGUUGAUGAACUCACUGUUUUGUCGACACCGUCAGGUUCAGGUUAUUCCUGAGCCCGCUGCCGACAAUGUGUGAAGAACCGAAGAAAUCAAACUUCAGGUAAGUGUUGGCUUUCUGUUAACUUCAUCGAGAUUGUGAAUUUUGUGAUUCAUUUCUGAACCUGUACGCCCAACCCAAACAAUUUUUUUACCAGGUCGAAAUAUAAUGGAAGGGGUGGUGGUUUUACAUGAGACUAUACAUGAGACCAUGAGUUUUACAAGAAACAUAUGAUGGGGUUAUUUUUAAAAUUAAUUUUGAAAAAGCUUAUGAUAAAGUUAAAUAGUAAUUCCUCCGACAAACAUUAUACAUGAAGGGUUUUUCUCAGCCGUGGUGUCACUGAUUUCUAAAAUGGUUAAAGGGGGAAGUGUCCGUAUAAAAGUCAAUGAUGACUUGGGUAAUAAUUUUCAAACGCACAAAGGCUUACAACAAGGAGAUCAAAUGUCGCAUAUACUUUUCAAUAUUAUGAUUGAUAUGUUAGCGAUUCUCAUUGAGCGAGCUAAAUUCGAUGGUUAAAUUAGAGGAGCCAUUCCACAUUUAGUGUAGGAUGGUUUGUCCAUUUUACAAUAUAUCGAUGAUACAUUAAUCCUAUGUGUGUUCGAACAAUUCUCAGGGCUAAAAAUUAACUUUCAUAAAAGUGAGAUUUUGCUUUGGGAAAGCCAAGGAAGUGGAUGAUCAAUAUAGACAACCUGUUCUAUAUAGUAAUUUUUUUUGGGGGGGGGGUGGCAAACACUGUUCUUUCUGCUAUGCGUAAGAGACAAUCUAACAUGUUUUCUUUGAGUGUCAUGUUGCUUAGUUUAUUUGGAGAUGUGUGGUUUUUUUUGCUUUUAAUAUCCCUUCACCCCGUAACGCGAAAAAUAUUUUUGUUAAUUGGCUUAGAGGGGUACCUAGGUCUAUUAAAAAAAUUAUUCUAAUUGGAGUUAGUGCUGUACGUUAGGCAAUUUGAUGUUUUUGUAAUAAUAAAGUUUUUAAUACUAAACAAUUAUCUAACUGUAUACAGGUUAUCUUCAUGUCUUUCUAUUGGCUUCAUUUUUUUUUCUACGAUGCUACCACAUGAGGAGCAUGAUACUGCGCACAAUGGUGCUACACUCUUGGAAUCGGUAGCCAAGGGUCUCUAAUUCCAUUCUAGGUGGCGUAGUCCAUUAGAAUUGCUAGCUAAAAAUCUAUGUGGUUUAACGCUAGCUAAUAAUAAAGGAGAAUUGAGAAUUUUUCCCAUCA

Sequence
(XR_003243577.1):

GUGUAUUUACAAUUACAUGUGUAAGUCUCAAAAUUACAUAUGUAAUUAGCAGGAUGUAAUUAUGGUGUAACUAAAUUAAUAUGAAGUAUCAAUCAUUACUUUGAUCUAUCUGUCAAAUCAAUACGCCUGCCUAGUGUUAUAGUGCUAGAGGAUGAUAAGGACAAAGCGCAACAGAGUAAAGAUGGCGCACCCGAGUAAAGAUGAAGAAAAUCAGUAAAGCAUGUGUGGCUAAUGCCACGUGAGCACGAAUCUCCGUGACAAUCCUAAGGCCAAACUGUCGCCACAACUAUUGCGAAUCCGUUCUAUAACAUGCCCACCAACCCGCGAUCCCGGCGCACGCACAACUGUCUCUGCCAAUUCCGCCCGCCGCCCCUCUCUAAGUCUCUACUCUCUUCCAGUUCCGCUGCCGGUCGCCGGCGACCUCUCGCAAACAUGGAGAUCGCCUCCUCCCCAGUCGUCCCAGAUGGAGAUCUUCCGCCGGUUCCCCACCAUGGACGUGCAAGCACUUCGCCGUCCAUUGCCGUUCAUCUGUCACCUCCCUCGUCUCCAGCAGUUGUGCCAUCGACUUCUGCGGCAGCAUCUCCUCAGCCAUCUGUUUCACCUGCUGCAGCGUCGGCUCUUUCACAAUCUGCUCCAGCCUUGGCAGCUGCACCUCCACAACCACCAAACGCAGAGGGAUCAUUUACACGAGAGGUGUUUCUGUUCACCACAUCAGGCAGCAUCUUUGUGGGACUCGCUGCGCUCACCAAAGUCAUCACCAAUGGCUGGCCGCCGGUUGCCAGGACACUCUUCGCGCCAUUCGCUGUCUGCAGGGGCAGAUCUAGAAAAAUAUAGUAGUAGGGGCUGAACAAACUACAUCAGUAUAAAUUGAACCUCUAGUCUCCAUAUCCUAUAAAUCUAUGGGAAAAAUAUUAGUGGGGGCUUAGGGGGGUCUCCACUGUCCCGGGGGCGGUAGUGGGGUCUCAAGACCCCUCCGCCCCCAUUGUGGAUCCGCCCCUGGCUGUCUGCGUGAUGAUCCUUCUAGCAGCAGGCUCGAUUGCAACCACCACCAUGUCAGACCGUCCUAAACUGCAUUUCCUGGCGAAAGUUGCAGCGAGACUUUCCCUUAUUCUAGCUAUCAUGAUGCUAGAGAUCCCAUUCAUUCAGAUGGCUGCAGGAUUAUCUGCCCUUGUGUUCGCGCCGAUUCUUAUGGUGAUUACGCUCAUUAUACUGGGAUGUAUCUGGUGGUGGAGCGAGCCUGAAAUUGUGUGCAGGUUGAUGAACUCACUGUUUUGUCGACACCGUCAGGUUCAGGUUAUUCCUGAGCCCGCUGCCGACAAUGUGUGAAGAACCGAAGAAAUCAAACUUCAGGUAAGUGUUGGCUUUCUGUUAACUUCAUCGAGAUUGUGAAUUUUGUGAUUCAUUUCUGAACCUGUACGCCCAACCCAAACAAUUUUUUUACCAGGUCGAAAUAUAAUGGAAGGGGUGGUGGUUUUACAUGAGACUAUACAUGAGACCAUGAGUUUUACAAGAAACAUAUGAUGGGGUUAUUUUUAAAAUUAAUUUUGAAAAAGCUUAUGAUAAAGUUAAAUAGUAAUUCCUCCGACAAACAUUAUACAUGAAGGGUUUUUCUCAGCCGUGGUGUCACUGAUUUCUAAAAUGGUUAAAGGGGGAAGUGUCCGUAUAAAAGUCAAUGAUGACUUGGGUAAUAAUUUUCAAACGCACAAAGGCUUACAACAAGGAGAUCAAAUGUCGCAUAUACUUUUCAAUAUUAUGAUUGAUAUGUUAGCGAUUCUCAUUGAGCGAGCUAAAUUCGAUGGUUAAAUUAGAGGAGCCAUUCCACAUUUAGUGUAGGAUGGUUUGUCCAUUUUACAAUAUAUCGAUGAUACAUUAAUCCUAUGUGUGUUCGAACAAUUCUCAGGGCUAAAAAUUAACUUUCAUAAAAGUGAGAUUUUGCUUUGGGAAAGCCAAGGAAGUGGAUGAUCAAUAUAGACAACCUGUUCUAUAUAGUAAUUUUUUUUGGGGGGGGGGUGGCAAACACUGUUCUUUCUGCUAUGCGUAAGAGACAAUCUAACAUGUUUUCUUUGAGUGUCAUGUUGCUUAGUUUAUUUGGAGAUGUGUGGUUUUUUUUGCUUUUAAUAUCCCUUCACCCCGUAACGCGAAAAAUAUUUUUGUUAAUUGGCUUAGAGGGGUACCUAGGUCUAUUAAAAAAAUUAUUCUAAUUGGAGUUAGUGCUGUACGUUAGGCAAUUUGAUGUUUUUGUAAUAAUAAAGUUUUUAAUACUAAACAAUUAUCUAACUGUAUACAGGUUAUCUUCAUGUCUUUCUAUUGGCUUCAUUUUUUUUUCUACGAUGCUACCACAUGAGGAGCAUGAUACUGCGCACAAUGGUGCUACACUCUUGGAAUCGGUAGCCAAGGGUCUCUAAUUCCAUUCUAGGUGGCGUAGUCCAUUAGAAUUGCUAGCUAAAAAUCUAUGUGGUUUAACGCUAGCUAAUAAUAAAGGAGAAUUGAGAAUUUUUCCCAUCA

Sequence
(XR_003243578.1):

UUCUCACCGUCCUCUUCUCCUGGUUAACUUGCCAGAUUUAGAGCUCGUUCACUUUGCUACUAUUUUCAACCUUAUCAUUUUUUUUUGCAAAGUUAUCAAAAAAAAAUGGCUACAUUUAGUUUGUUGCCAAAUUUUGAUAAGUACGUAUGAAAUUUUGUCAAAAUUUGAUAACCUUGCUAAAAUUUUGAUAACCUUACCAAAAUUUGACAAUGUCAAAACUUGAUAAGAUUGAAAUGGAAGCAAAGUGAACAAGCUCUUAGUGAUUCAUCCUGGAAAGAAAAAAAAACCUUUCUCCUUCGGGGCUAUUAUACUUUUACUCCUAUUUUAAAGUUCAAUUAUAAUUUUGCUCUUAUCUUUUAGGGGUUAGCAUUUCGAUUUGCAUUUUGGCCUCUGCUUUUCUGAAACGGAGCAGAGAUUUGCCCUUUGUUUUGGAUGGAUGAUGGUGUUAAGUCGAGCACGAAAAUACAUAUAUGCCUUUACUUAUUGCAUAUUUACCCCUACCUGUAGAUAUCACUGGUGUUUUCACCCAUAUUUUGCACAUAAAGCUGCAAACUGUUUUGAGCUUAAAUUUUUUGAAAUAAUUUAAAUCUUAUCAUAUUUUUGACAAACUUUGACAAAUAUGAUAGUUUUGGUAUAAUUUGAAUAUAGUUUUGGCAGAAUUUGACACAACUAGCACUAGCACUCACUUGGUGGUUAGUCAAAGAUUAAUCUUUUUCUCUAAUCGCCUCGAUCAGCAGUUAUGAAUGCAAAUUACAUGACAGCAAUGAAGAGACAAUCAACACUAAUCUUCCUCUCACGCCGUGCUGGUCCGCACUAGUCAACAGGGCAAGCGAAGGAGGAAUCCACCUUGGCAAACCUUCUGUUGUGCCCUAUCGAGGAGCCACCCCGCCCCGCCUGCUGCUCGCGUCGAGAGGCUUCCGCCGCCGCCGGAGUGGUCGCCGCGCCGAGGAACCGCCGCCGCCGCCGCAUCGAGGAGUUGUCGAAGCGACCUGCUGCUCGAUCGCGUCGAGUAUAUGCCUCCGCAUCAGGGAGUCGUCGCCGCGACCUGCUGAUUUCGUCGAGGAGCCGCCGCCGCCGCCGCCUGGUGCUCGUGACGCCGCGCUAGCAAUGGCCGGAGCCACCGUCGCCGCCUGCUCCAUCUCCCCAUAGGAUUUUGGAAUGGGAACGAUGGGGUCUUGGGGACACAUACUCAUGGGGAUCAUUUACACGAGAGGUGUUUCUGUUCACCACAUCAGGCAGCAUCUUUGUGGGACUCGCUGCGCUCACCAAAGUCAUCACCAAUGGCUGGCCGCCGGUUGCCAGGACACUCUUCGCGCCAUUCGCUGUCUGCAGGGGCAGAUCUAGAAAAAUAUAGUAGUAGGGGCUGAACAAACUACAUCAGUAUAAAUUGAACCUCUAGUCUCCAUAUCCUAUAAAUCUAUGGGAAAAAUAUUAGUGGGGGCUUAGGGGGGUCUCCACUGUCCCGGGGGCGGUAGUGGGGUCUCAAGACCCCUCCGCCCCCAUUGUGGAUCCGCCCCUGGCUGUCUGCGUGAUGAUCCUUCUAGCAGCAGGCUCGAUUGCAACCACCACCAUGUCAGACCGUCCUAAACUGCAUUUCCUGGCGAAAGUUGCAGCGAGACUUUCCCUUAUUCUAGCUAUCAUGAUGCUAGAGAUCCCAUUCAUUCAGAUGGCUGCAGGAUUAUCUGCCCUUGUGUUCGCGCCGAUUCUUAUGGUGAUUACGCUCAUUAUACUGGGAUGUAUCUGGUGGUGGAGCGAGCCUGAAAUUGUGUGCAGGUUGAUGAACUCACUGUUUUGUCGACACCGUCAGGUUCAGGUUAUUCCUGAGCCCGCUGCCGACAAUGUGUGAAGAACCGAAGAAAUCAAACUUCAGGUAAGUGUUGGCUUUCUGUUAACUUCAUCGAGAUUGUGAAUUUUGUGAUUCAUUUCUGAACCUGUACGCCCAACCCAAACAAUUUUUUUACCAGGUCGAAAUAUAAUGGAAGGGGUGGUGGUUUUACAUGAGACUAUACAUGAGACCAUGAGUUUUACAAGAAACAUAUGAUGGGGUUAUUUUUAAAAUUAAUUUUGAAAAAGCUUAUGAUAAAGUUAAAUAGUAAUUCCUCCGACAAACAUUAUACAUGAAGGGUUUUUCUCAGCCGUGGUGUCACUGAUUUCUAAAAUGGUUAAAGGGGGAAGUGUCCGUAUAAAAGUCAAUGAUGACUUGGGUAAUAAUUUUCAAACGCACAAAGGCUUACAACAAGGAGAUCAAAUGUCGCAUAUACUUUUCAAUAUUAUGAUUGAUAUGUUAGCGAUUCUCAUUGAGCGAGCUAAAUUCGAUGGUUAAAUUAGAGGAGCCAUUCCACAUUUAGUGUAGGAUGGUUUGUCCAUUUUACAAUAUAUCGAUGAUACAUUAAUCCUAUGUGUGUUCGAACAAUUCUCAGGGCUAAAAAUUAACUUUCAUAAAAGUGAGAUUUUGCUUUGGGAAAGCCAAGGAAGUGGAUGAUCAAUAUAGACAACCUGUUCUAUAUAGUAAUUUUUUUUGGGGGGGGGGUGGCAAACACUGUUCUUUCUGCUAUGCGUAAGAGACAAUCUAACAUGUUUUCUUUGAGUGUCAUGUUGCUUAGUUUAUUUGGAGAUGUGUGGUUUUUUUUGCUUUUAAUAUCCCUUCACCCCGUAACGCGAAAAAUAUUUUUGUUAAUUGGCUUAGAGGGGUACCUAGGUCUAUUAAAAAAAUUAUUCUAAUUGGAGUUAGUGCUGUACGUUAGGCAAUUUGAUGUUUUUGUAAUAAUAAAGUUUUUAAUACUAAACAAUUAUCUAACUGUAUACAGGUUAUCUUCAUGUCUUUCUAUUGGCUUCAUUUUUUUUUCUACGAUGCUACCACAUGAGGAGCAUGAUACUGCGCACAAUGGUGCUACACUCUUGGAAUCGGUAGCCAAGGGUCUCUAAUUCCAUUCUAGGUGGCGUAGUCCAUUAGAAUUGCUAGCUAAAAAUCUAUGUGGUUUAACGCUAGCUAAUAAUAAAGGAGAAUUGAGAAUUUUUCCCAUCA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

281

LEP:

57.11%

ME_num:

209

MEP:

42.48%

HE_num:

1

HEP:

0.2%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.77

Avg Expression:

1.93

Tip: OSA-LNC107281552 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA2.662378603628840.00516650764030679
2Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated1.002281297903960.0010323252110124
3Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"-2.05742297470570.000306866573874939
4Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days"-1.499166442664860.00642935237337857
5Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256-1.323194079599362.27779517606763e-05
6Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279-1.526589104252852.45413095188424e-07
7Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8-1.017647178732010.00318734687212388
8Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12-1.307079075570435.18943110468349e-09
9Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105-1.355873946910126.44092216028331e-07
10Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341-1.543499385790983.536885660838e-08
11Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331-1.195672552210910.00203936539828096
12Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342-1.820269745083382.20964903087932e-10
13Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae-1.449215097077570.000333557059429675
14Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day1.133320915063060.0157476798079894