Chr:
Chr7
Start:
3890330
End:
3894276
Strand:
+
Ref_name:
LOC107281552
Sequence
(XR_003243576.1):
AAAAUUAAAUGUGUAUUUACAAUUACAUGUGUAAGUCUCAAAAUUACAUAUGUAAUUAGCAGGAUGUAAUUAUGGUGUAACUAAAUUAAUAUGAAGUAUCAAUCAUUACUUUGAUCUAUCUGUCAAAUCAAUACGCCUGCCUAGUGUUAUAGUGCUAGAGGAUGAUAAGGACAAAGCGCAACAGAGUAAAGAUGGCGCACCCGAGUAAAGAUGAAGAAAAUCAGUAAAGCAUGUGUGGCUAAUGCCACGUGAGCACGAAUCUCCGUGACAAUCCUAAGGCCAAACUGUCGCCACAACUAUUGCGAAUCCGUUCUAUAACAUGCCCACCAACCCGCGAUCCCGGCGCACGCACAACUGUCUCUGCCAAUUCCGCCCGCCGCCCCUCUCUAAGUCUCUACUCUCUUCCAGUUCCGCUGCCGGUCGCCGGCGACCUCUCGCAAACAUGGAGAUCGCCUCCUCCCCAGUCGUCCCAGAUGGAGAUCUUCCGCCGGUUCCCCACCAUGGACGUGCAAGCACUUCGCCGUCCAUUGCCGUUCAUCUGUCACCUCCCUCGUCUCCAGCAGUUGUGCCAUCGACUUCUGCGGCAGCAUCUCCUCAGCCAUCUGUUUCACCUGCUGCAGCGUCGGCUCUUUCACAAUCUGCUCCAGCCUUGGCAGCUGCACCUCCACAACCACCAAACGCAGAGUCAACAGGGCAAGCGAAGGAGGAAUCCACCUUGGCAAACCUUCUGUUGUGCCCUAUCGAGGAGCCACCCCGCCCCGCCUGCUGCUCGCGUCGAGAGGCUUCCGCCGCCGCCGGAGUGGUCGCCGCGCCGAGGAACCGCCGCCGCCGCCGCAUCGAGGAGUUGUCGAAGCGACCUGCUGCUCGAUCGCGUCGAGUAUAUGCCUCCGCAUCAGGGAGUCGUCGCCGCGACCUGCUGAUUUCGUCGAGGAGCCGCCGCCGCCGCCGCCUGGUGCUCGUGACGCCGCGCUAGCAAUGGCCGGAGCCACCGUCGCCGCCUGCUCCAUCUCCCCAUAGGAUUUUGGAAUGGGAACGAUGGGGUCUUGGGGACACAUACUCAUGGGUAGAAGAGUACUCCCAUAUUUCUUAAACCAUUUUUUUUCUUUUCCAUUUCUAUUUCUUUUAACUCAAUACCAUGGGACCGACCUAACUAUCAUCUAUAGUAGGGGCAAACGGUUACUUCAUUUGAAAAAAAUAAAAAUGAAUUCGUAAAAUUGAAAGUUAGGGCAACACAAUUCUUCCUUCUUUAUAUCACACUCAUGCAUAUAAUCGAGUUAUAUAUCUACUGUUCCAGGGAUCAUUUACACGAGAGGUGUUUCUGUUCACCACAUCAGGCAGCAUCUUUGUGGGACUCGCUGCGCUCACCAAAGUCAUCACCAAUGGCUGGCCGCCGGUUGCCAGGACACUCUUCGCGCCAUUCGCUGUCUGCAGGGGCAGAUCUAGAAAAAUAUAGUAGUAGGGGCUGAACAAACUACAUCAGUAUAAAUUGAACCUCUAGUCUCCAUAUCCUAUAAAUCUAUGGGAAAAAUAUUAGUGGGGGCUUAGGGGGGUCUCCACUGUCCCGGGGGCGGUAGUGGGGUCUCAAGACCCCUCCGCCCCCAUUGUGGAUCCGCCCCUGGCUGUCUGCGUGAUGAUCCUUCUAGCAGCAGGCUCGAUUGCAACCACCACCAUGUCAGACCGUCCUAAACUGCAUUUCCUGGCGAAAGUUGCAGCGAGACUUUCCCUUAUUCUAGCUAUCAUGAUGCUAGAGAUCCCAUUCAUUCAGAUGGCUGCAGGAUUAUCUGCCCUUGUGUUCGCGCCGAUUCUUAUGGUGAUUACGCUCAUUAUACUGGGAUGUAUCUGGUGGUGGAGCGAGCCUGAAAUUGUGUGCAGGUUGAUGAACUCACUGUUUUGUCGACACCGUCAGGUUCAGGUUAUUCCUGAGCCCGCUGCCGACAAUGUGUGAAGAACCGAAGAAAUCAAACUUCAGGUAAGUGUUGGCUUUCUGUUAACUUCAUCGAGAUUGUGAAUUUUGUGAUUCAUUUCUGAACCUGUACGCCCAACCCAAACAAUUUUUUUACCAGGUCGAAAUAUAAUGGAAGGGGUGGUGGUUUUACAUGAGACUAUACAUGAGACCAUGAGUUUUACAAGAAACAUAUGAUGGGGUUAUUUUUAAAAUUAAUUUUGAAAAAGCUUAUGAUAAAGUUAAAUAGUAAUUCCUCCGACAAACAUUAUACAUGAAGGGUUUUUCUCAGCCGUGGUGUCACUGAUUUCUAAAAUGGUUAAAGGGGGAAGUGUCCGUAUAAAAGUCAAUGAUGACUUGGGUAAUAAUUUUCAAACGCACAAAGGCUUACAACAAGGAGAUCAAAUGUCGCAUAUACUUUUCAAUAUUAUGAUUGAUAUGUUAGCGAUUCUCAUUGAGCGAGCUAAAUUCGAUGGUUAAAUUAGAGGAGCCAUUCCACAUUUAGUGUAGGAUGGUUUGUCCAUUUUACAAUAUAUCGAUGAUACAUUAAUCCUAUGUGUGUUCGAACAAUUCUCAGGGCUAAAAAUUAACUUUCAUAAAAGUGAGAUUUUGCUUUGGGAAAGCCAAGGAAGUGGAUGAUCAAUAUAGACAACCUGUUCUAUAUAGUAAUUUUUUUUGGGGGGGGGGUGGCAAACACUGUUCUUUCUGCUAUGCGUAAGAGACAAUCUAACAUGUUUUCUUUGAGUGUCAUGUUGCUUAGUUUAUUUGGAGAUGUGUGGUUUUUUUUGCUUUUAAUAUCCCUUCACCCCGUAACGCGAAAAAUAUUUUUGUUAAUUGGCUUAGAGGGGUACCUAGGUCUAUUAAAAAAAUUAUUCUAAUUGGAGUUAGUGCUGUACGUUAGGCAAUUUGAUGUUUUUGUAAUAAUAAAGUUUUUAAUACUAAACAAUUAUCUAACUGUAUACAGGUUAUCUUCAUGUCUUUCUAUUGGCUUCAUUUUUUUUUCUACGAUGCUACCACAUGAGGAGCAUGAUACUGCGCACAAUGGUGCUACACUCUUGGAAUCGGUAGCCAAGGGUCUCUAAUUCCAUUCUAGGUGGCGUAGUCCAUUAGAAUUGCUAGCUAAAAAUCUAUGUGGUUUAACGCUAGCUAAUAAUAAAGGAGAAUUGAGAAUUUUUCCCAUCA
Sequence
(XR_003243577.1):
GUGUAUUUACAAUUACAUGUGUAAGUCUCAAAAUUACAUAUGUAAUUAGCAGGAUGUAAUUAUGGUGUAACUAAAUUAAUAUGAAGUAUCAAUCAUUACUUUGAUCUAUCUGUCAAAUCAAUACGCCUGCCUAGUGUUAUAGUGCUAGAGGAUGAUAAGGACAAAGCGCAACAGAGUAAAGAUGGCGCACCCGAGUAAAGAUGAAGAAAAUCAGUAAAGCAUGUGUGGCUAAUGCCACGUGAGCACGAAUCUCCGUGACAAUCCUAAGGCCAAACUGUCGCCACAACUAUUGCGAAUCCGUUCUAUAACAUGCCCACCAACCCGCGAUCCCGGCGCACGCACAACUGUCUCUGCCAAUUCCGCCCGCCGCCCCUCUCUAAGUCUCUACUCUCUUCCAGUUCCGCUGCCGGUCGCCGGCGACCUCUCGCAAACAUGGAGAUCGCCUCCUCCCCAGUCGUCCCAGAUGGAGAUCUUCCGCCGGUUCCCCACCAUGGACGUGCAAGCACUUCGCCGUCCAUUGCCGUUCAUCUGUCACCUCCCUCGUCUCCAGCAGUUGUGCCAUCGACUUCUGCGGCAGCAUCUCCUCAGCCAUCUGUUUCACCUGCUGCAGCGUCGGCUCUUUCACAAUCUGCUCCAGCCUUGGCAGCUGCACCUCCACAACCACCAAACGCAGAGGGAUCAUUUACACGAGAGGUGUUUCUGUUCACCACAUCAGGCAGCAUCUUUGUGGGACUCGCUGCGCUCACCAAAGUCAUCACCAAUGGCUGGCCGCCGGUUGCCAGGACACUCUUCGCGCCAUUCGCUGUCUGCAGGGGCAGAUCUAGAAAAAUAUAGUAGUAGGGGCUGAACAAACUACAUCAGUAUAAAUUGAACCUCUAGUCUCCAUAUCCUAUAAAUCUAUGGGAAAAAUAUUAGUGGGGGCUUAGGGGGGUCUCCACUGUCCCGGGGGCGGUAGUGGGGUCUCAAGACCCCUCCGCCCCCAUUGUGGAUCCGCCCCUGGCUGUCUGCGUGAUGAUCCUUCUAGCAGCAGGCUCGAUUGCAACCACCACCAUGUCAGACCGUCCUAAACUGCAUUUCCUGGCGAAAGUUGCAGCGAGACUUUCCCUUAUUCUAGCUAUCAUGAUGCUAGAGAUCCCAUUCAUUCAGAUGGCUGCAGGAUUAUCUGCCCUUGUGUUCGCGCCGAUUCUUAUGGUGAUUACGCUCAUUAUACUGGGAUGUAUCUGGUGGUGGAGCGAGCCUGAAAUUGUGUGCAGGUUGAUGAACUCACUGUUUUGUCGACACCGUCAGGUUCAGGUUAUUCCUGAGCCCGCUGCCGACAAUGUGUGAAGAACCGAAGAAAUCAAACUUCAGGUAAGUGUUGGCUUUCUGUUAACUUCAUCGAGAUUGUGAAUUUUGUGAUUCAUUUCUGAACCUGUACGCCCAACCCAAACAAUUUUUUUACCAGGUCGAAAUAUAAUGGAAGGGGUGGUGGUUUUACAUGAGACUAUACAUGAGACCAUGAGUUUUACAAGAAACAUAUGAUGGGGUUAUUUUUAAAAUUAAUUUUGAAAAAGCUUAUGAUAAAGUUAAAUAGUAAUUCCUCCGACAAACAUUAUACAUGAAGGGUUUUUCUCAGCCGUGGUGUCACUGAUUUCUAAAAUGGUUAAAGGGGGAAGUGUCCGUAUAAAAGUCAAUGAUGACUUGGGUAAUAAUUUUCAAACGCACAAAGGCUUACAACAAGGAGAUCAAAUGUCGCAUAUACUUUUCAAUAUUAUGAUUGAUAUGUUAGCGAUUCUCAUUGAGCGAGCUAAAUUCGAUGGUUAAAUUAGAGGAGCCAUUCCACAUUUAGUGUAGGAUGGUUUGUCCAUUUUACAAUAUAUCGAUGAUACAUUAAUCCUAUGUGUGUUCGAACAAUUCUCAGGGCUAAAAAUUAACUUUCAUAAAAGUGAGAUUUUGCUUUGGGAAAGCCAAGGAAGUGGAUGAUCAAUAUAGACAACCUGUUCUAUAUAGUAAUUUUUUUUGGGGGGGGGGUGGCAAACACUGUUCUUUCUGCUAUGCGUAAGAGACAAUCUAACAUGUUUUCUUUGAGUGUCAUGUUGCUUAGUUUAUUUGGAGAUGUGUGGUUUUUUUUGCUUUUAAUAUCCCUUCACCCCGUAACGCGAAAAAUAUUUUUGUUAAUUGGCUUAGAGGGGUACCUAGGUCUAUUAAAAAAAUUAUUCUAAUUGGAGUUAGUGCUGUACGUUAGGCAAUUUGAUGUUUUUGUAAUAAUAAAGUUUUUAAUACUAAACAAUUAUCUAACUGUAUACAGGUUAUCUUCAUGUCUUUCUAUUGGCUUCAUUUUUUUUUCUACGAUGCUACCACAUGAGGAGCAUGAUACUGCGCACAAUGGUGCUACACUCUUGGAAUCGGUAGCCAAGGGUCUCUAAUUCCAUUCUAGGUGGCGUAGUCCAUUAGAAUUGCUAGCUAAAAAUCUAUGUGGUUUAACGCUAGCUAAUAAUAAAGGAGAAUUGAGAAUUUUUCCCAUCA
Sequence
(XR_003243578.1):
UUCUCACCGUCCUCUUCUCCUGGUUAACUUGCCAGAUUUAGAGCUCGUUCACUUUGCUACUAUUUUCAACCUUAUCAUUUUUUUUUGCAAAGUUAUCAAAAAAAAAUGGCUACAUUUAGUUUGUUGCCAAAUUUUGAUAAGUACGUAUGAAAUUUUGUCAAAAUUUGAUAACCUUGCUAAAAUUUUGAUAACCUUACCAAAAUUUGACAAUGUCAAAACUUGAUAAGAUUGAAAUGGAAGCAAAGUGAACAAGCUCUUAGUGAUUCAUCCUGGAAAGAAAAAAAAACCUUUCUCCUUCGGGGCUAUUAUACUUUUACUCCUAUUUUAAAGUUCAAUUAUAAUUUUGCUCUUAUCUUUUAGGGGUUAGCAUUUCGAUUUGCAUUUUGGCCUCUGCUUUUCUGAAACGGAGCAGAGAUUUGCCCUUUGUUUUGGAUGGAUGAUGGUGUUAAGUCGAGCACGAAAAUACAUAUAUGCCUUUACUUAUUGCAUAUUUACCCCUACCUGUAGAUAUCACUGGUGUUUUCACCCAUAUUUUGCACAUAAAGCUGCAAACUGUUUUGAGCUUAAAUUUUUUGAAAUAAUUUAAAUCUUAUCAUAUUUUUGACAAACUUUGACAAAUAUGAUAGUUUUGGUAUAAUUUGAAUAUAGUUUUGGCAGAAUUUGACACAACUAGCACUAGCACUCACUUGGUGGUUAGUCAAAGAUUAAUCUUUUUCUCUAAUCGCCUCGAUCAGCAGUUAUGAAUGCAAAUUACAUGACAGCAAUGAAGAGACAAUCAACACUAAUCUUCCUCUCACGCCGUGCUGGUCCGCACUAGUCAACAGGGCAAGCGAAGGAGGAAUCCACCUUGGCAAACCUUCUGUUGUGCCCUAUCGAGGAGCCACCCCGCCCCGCCUGCUGCUCGCGUCGAGAGGCUUCCGCCGCCGCCGGAGUGGUCGCCGCGCCGAGGAACCGCCGCCGCCGCCGCAUCGAGGAGUUGUCGAAGCGACCUGCUGCUCGAUCGCGUCGAGUAUAUGCCUCCGCAUCAGGGAGUCGUCGCCGCGACCUGCUGAUUUCGUCGAGGAGCCGCCGCCGCCGCCGCCUGGUGCUCGUGACGCCGCGCUAGCAAUGGCCGGAGCCACCGUCGCCGCCUGCUCCAUCUCCCCAUAGGAUUUUGGAAUGGGAACGAUGGGGUCUUGGGGACACAUACUCAUGGGGAUCAUUUACACGAGAGGUGUUUCUGUUCACCACAUCAGGCAGCAUCUUUGUGGGACUCGCUGCGCUCACCAAAGUCAUCACCAAUGGCUGGCCGCCGGUUGCCAGGACACUCUUCGCGCCAUUCGCUGUCUGCAGGGGCAGAUCUAGAAAAAUAUAGUAGUAGGGGCUGAACAAACUACAUCAGUAUAAAUUGAACCUCUAGUCUCCAUAUCCUAUAAAUCUAUGGGAAAAAUAUUAGUGGGGGCUUAGGGGGGUCUCCACUGUCCCGGGGGCGGUAGUGGGGUCUCAAGACCCCUCCGCCCCCAUUGUGGAUCCGCCCCUGGCUGUCUGCGUGAUGAUCCUUCUAGCAGCAGGCUCGAUUGCAACCACCACCAUGUCAGACCGUCCUAAACUGCAUUUCCUGGCGAAAGUUGCAGCGAGACUUUCCCUUAUUCUAGCUAUCAUGAUGCUAGAGAUCCCAUUCAUUCAGAUGGCUGCAGGAUUAUCUGCCCUUGUGUUCGCGCCGAUUCUUAUGGUGAUUACGCUCAUUAUACUGGGAUGUAUCUGGUGGUGGAGCGAGCCUGAAAUUGUGUGCAGGUUGAUGAACUCACUGUUUUGUCGACACCGUCAGGUUCAGGUUAUUCCUGAGCCCGCUGCCGACAAUGUGUGAAGAACCGAAGAAAUCAAACUUCAGGUAAGUGUUGGCUUUCUGUUAACUUCAUCGAGAUUGUGAAUUUUGUGAUUCAUUUCUGAACCUGUACGCCCAACCCAAACAAUUUUUUUACCAGGUCGAAAUAUAAUGGAAGGGGUGGUGGUUUUACAUGAGACUAUACAUGAGACCAUGAGUUUUACAAGAAACAUAUGAUGGGGUUAUUUUUAAAAUUAAUUUUGAAAAAGCUUAUGAUAAAGUUAAAUAGUAAUUCCUCCGACAAACAUUAUACAUGAAGGGUUUUUCUCAGCCGUGGUGUCACUGAUUUCUAAAAUGGUUAAAGGGGGAAGUGUCCGUAUAAAAGUCAAUGAUGACUUGGGUAAUAAUUUUCAAACGCACAAAGGCUUACAACAAGGAGAUCAAAUGUCGCAUAUACUUUUCAAUAUUAUGAUUGAUAUGUUAGCGAUUCUCAUUGAGCGAGCUAAAUUCGAUGGUUAAAUUAGAGGAGCCAUUCCACAUUUAGUGUAGGAUGGUUUGUCCAUUUUACAAUAUAUCGAUGAUACAUUAAUCCUAUGUGUGUUCGAACAAUUCUCAGGGCUAAAAAUUAACUUUCAUAAAAGUGAGAUUUUGCUUUGGGAAAGCCAAGGAAGUGGAUGAUCAAUAUAGACAACCUGUUCUAUAUAGUAAUUUUUUUUGGGGGGGGGGUGGCAAACACUGUUCUUUCUGCUAUGCGUAAGAGACAAUCUAACAUGUUUUCUUUGAGUGUCAUGUUGCUUAGUUUAUUUGGAGAUGUGUGGUUUUUUUUGCUUUUAAUAUCCCUUCACCCCGUAACGCGAAAAAUAUUUUUGUUAAUUGGCUUAGAGGGGUACCUAGGUCUAUUAAAAAAAUUAUUCUAAUUGGAGUUAGUGCUGUACGUUAGGCAAUUUGAUGUUUUUGUAAUAAUAAAGUUUUUAAUACUAAACAAUUAUCUAACUGUAUACAGGUUAUCUUCAUGUCUUUCUAUUGGCUUCAUUUUUUUUUCUACGAUGCUACCACAUGAGGAGCAUGAUACUGCGCACAAUGGUGCUACACUCUUGGAAUCGGUAGCCAAGGGUCUCUAAUUCCAUUCUAGGUGGCGUAGUCCAUUAGAAUUGCUAGCUAAAAAUCUAUGUGGUUUAACGCUAGCUAAUAAUAAAGGAGAAUUGAGAAUUUUUCCCAUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.11%
ME_num:
MEP:
42.48%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.77
Avg Expression:
1.93
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.66237860362884 | 0.00516650764030679 |
2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.00228129790396 | 0.0010323252110124 |
3 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -2.0574229747057 | 0.000306866573874939 |
4 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.49916644266486 | 0.00642935237337857 |
5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.32319407959936 | 2.27779517606763e-05 |
6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.52658910425285 | 2.45413095188424e-07 |
7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.01764717873201 | 0.00318734687212388 |
8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.30707907557043 | 5.18943110468349e-09 |
9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.35587394691012 | 6.44092216028331e-07 |
10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.54349938579098 | 3.536885660838e-08 |
11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.19567255221091 | 0.00203936539828096 |
12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.82026974508338 | 2.20964903087932e-10 |
13 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.44921509707757 | 0.000333557059429675 |
14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.13332091506306 | 0.0157476798079894 |