Chr:
Chr7
Start:
26858390
End:
26860673
Strand:
+
Ref_name:
LOC107281551
Sequence
(XR_001547399.2):
CCCCCUCCAUUUUCCACACACCAAUCGAGCUCUUCGAGCUCUGCCUCUCUCUCUCUCUCCUGCCAUGUCCGGCUGCCACCUACCGUCGGCCGAUCUCCCUCACCGGAAUUCCACUAAUUAAAUCCUUGCGCCAUCGGGUUUGCCUCGACGAGGUGAACUCAUUUUCCUAGUUUCCCCUUCCUUUACCCUUCCGAAACCAACCACCACAGCCACCUCCUCUUGUUGCCAGAGCUAUACUCUUGCCUGCGCCGUUCCGGCCAUCUCCUUCACUCCCUUUGCCAACCACCGACUUCCCCGGAUGCGCAUCGUUCGGGAACACCAUCCUCUACCGGCGCAGUCAUAUCUUAGCCACCACAGCAUCGGCGCCCUUCCUCUCCUCCUCUCGGUUCCCUGGCUAACAGAGAGGAAGAAAACGAAGCAAGGAGAGAAGAACCGGAGGAAGAAGAGACAUAUGACAUGUGGGCCCCACUUCUAUAAAUGAGUCACGUGGUUUAAAGAGGUCGGUGGUUGCUGUAAGGAGGGAUUCUUUCAUAGAUUUGAAGUUCGAAGUGGGCGCGUUUCCAUCCAGUUUCGACCAGCAUUAUGUUUCCUUCAAGGAGAAAAUCCAUGGCUAUGAUACUCAAGAAAUAAAGACUGAUUUUGCGUUAAUCUCAGUAAAGGUGACUUGGUCGGCUUUGCUUUCUGGACUAGAGUGAUACCUCUGUUUCUGUAACAGAGUGGGCCAAGAGUGGCUAAAAACCUGCGGCUUACUAAACCUAGGUGCGGCAAACUUGGAUAGUAAAGUAUUGUAAUAAAUCUGUCAUUGUAAUUAAGCCCUCCGUCCCUGAAAAAAAGUACUUUUAGUAAUGCAUCUGAAUAAGUGUUUGUUGAGAUGCAUAGUCGGUCAAUCUCUCCGUCCCUGAAAAACUGAACAAGAACUUUUAGACAUGCAUAAUUAGUUUCGUCUCUGUAUUAUUACUUCAGCACUAGGGGUUGUAUUAAUUAUAUGGAGGAAUCUUCAAGGCACAACCGUAGAGUGGCUUCUCUGUGAUUUCUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
31.3%
ME_num:
MEP:
32.72%
HE_num:
HEP:
35.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.83
Avg Expression:
22.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.15403752770855 | 1.76697786010692e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.73896319604771 | 5.3322329170198e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.72361644268117 | 0.00234358996617386 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.09839811356494 | 0.00218097113391287 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.14544751589028 | 0.000503216545648128 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.01111392040104 | 9.20794944587579e-07 |
| 7 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.95747533164093 | 2.16701909893532e-11 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.22084842018052 | 2.11439623413567e-15 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.08561533720586 | 1.04321561521564e-10 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 7.61041761240026 | 0.000206703693329999 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 3.54940710690233 | 1.32482612166066e-05 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 2.67550064886872 | 0.0169131858541466 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 3.0038228415562 | 7.73646915625131e-05 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.66823783252194 | 6.18064838343199e-28 |
| 15 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.86923458840948 | 1.0355820227733e-27 |
| 16 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 1.01712235842282 | 1.03968436037808e-07 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.51243482424959 | 3.89374441529179e-06 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.98507165652155 | 0.000152164005289564 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 3.03618242968696 | 0.00664451585949381 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.27614731236897 | 1.07938668577191e-06 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 2.72639238620477 | 0.00174321329353586 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.99691864619003 | 0.000178423704753092 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 3.54723270995612 | 0.00448672715197764 |
| 24 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 3.32777768177962 | 0.000235032547261439 |
| 25 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.4272619209308 | 0.0053730553858455 |
| 26 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.97384739233299 | 0.0484935252801436 |
| 27 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.17460185549859 | 7.34597621331507e-06 |