Chr:
Chr7
Start:
18681816
End:
18683832
Strand:
+
Ref_name:
LOC107281537
Sequence
(XR_001547379.2):
UCUACUCUGUCAACAAAUAAAAAAAAAGAACAUAGUGAAUACUAUUUUUAUGGCAUGCAACCUGCAAAGUAAUGGUUGUUAAUUAGUUUGAUUCCAAUAGCUCUUGUUUAAGUUCCUGCACUUUCAUUGUUGCUACUUUGAUAGUCUCUAAUAAAUAUUCUAAUCUUUGACCUAUGUCAUCAGUGUCUCCCCAAUUAUCUGUGUUUUUUUGGCAGGAAAGCAUACCUAAAGUGCGAAAGCUGGUAUCACUAUUCAGAAGCACUUAGGCUGAAUGGAUCUGAACUUGGAGGCCACAAGUUGUGUGUGUCUGAAUGUUUUAGGGGCAGGAAAUUCUGGUCAGGCCAUAUCUCUCCUGAUGGGCCUGGUACAGGUAAAAGUAAAGGGGCUAUUGCUUAUUUGACCCCGUUUUAGAUCCUAACUACCAAUUUGACCCUACUUUUCAGAGUUUGCUUAUUUGACCCUCCUUUUCAAAAACGAAGCUCCCGUUUGACCCUGUUUCCGCUAGUCCGUUAAGUUUUGAUUUAAAAUAAAAAAAGAAAUGCAACUAUUAUUCAUAAUACCCAUAAUACCCUUAGGAAACCCUAUCCAUCCACCCUCAACCCUAUCCACAUUUCUCUCUCUACACACUUUCUCUCUCUCCUUGCGGCGGUGCUGGUGCUCUAAUGGGGCGGCGGCUGCGCUGAUGGGGCGGCGGAGACGGCGAGCCGGCGCCGGCCUUGGUCACGACGACGACGAGGAGUGGCGGCGGCGAGUUCUUCUCCUCUCCUCCACGGAUCCACCACAGGAGAGGCAGUGAAUGGCGAGACGGCGAGCUGGCACCGGCCCUGCUGACGACGACGACGACAAGGAGUGGCAGCGGCGAGUCCGAGCGGUGGAGCUCGAGCUGCGGUCAGCGGAUCCGGCGGCGACGCCGCCGCCUCCUCUCUCCACCCGCGCGCCUGCGCCGGGGCCGCCGCCGCCGCCUCCUCCCUCCACCCGCGCGCCUGCAUCGGGACCGCCGCCGCCGCCUUCUCCCUCCUUCCACCCGCCUGCGCCGGCGCCGGCGCCGCCGCCUCCACCUCCUUCAUUCCGCGCCCCUAGCUGCCGCCGCUUCCUUCCUCCCUCCACGAGCCGGCGCGGCUGCUCGCCCCCUCCGUGCGCUGCCACCGUAACUCGCCCCUUCGUCAGCCGCCGCUGCCGCCUCCUCCCUCCGCCUCCUCAGAGCGCCGCCGCCGCCGCCCUAACAAUGCCGCCGCCGCAAGUCGCCGCCCCAUCGGCGCCUGCUCUCCCUCUCGCCGAUCCGUGGAGAAGAGAAGAGAAGAAAAGAGAGAAGAGAGGAGACGAGGAGAGGAGAAGAGAGAACUGACGGGAAAGAAGAUAGUUUUCAGCAACUGCAGUGAUGAGGAGCAGGAAGAAGAGCUUCAAGCCAAAUCUGCAAUAUAAAAAAUGUACUAUAUGCAGUGUACUAAUUGCUAGAGUUUAAAAGUAUGACUUGAAGACUGUUUUAUGCGCUGGCUGAGCUAUAGUUCACUGACAACCUUUGGGAUUAUUAGGAGACUGAAGAUGCAAUAGACUAGGUUUGGUUCACAAUACCGCUGGGGUGUUGAAUUUCGACCCAGCAAGAUGUCGAAAACUGAGAAAUUUUGACCAAUCUCAGUUGAAUUACUGUUUUAAAUUUGAAUUUCUCAAAAACCAUUCGAAACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
35.16%
ME_num:
MEP:
52.44%
HE_num:
HEP:
12.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.85
Avg Expression:
11.86
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.25765090390958 | 0.035580798295947 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.82114515305399 | 0.0437327355236957 |
| 3 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 1.23236142935266 | 0.0137258649352848 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.00525790971049 | 1.77113439590744e-14 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.58827203249206 | 0.00631289594742744 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.18609461132592 | 0.0107348268184981 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.34989714381416 | 0.00083179063301186 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.0275253297634 | 0.0299585861731006 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.55932164878638 | 2.09868280216428e-56 |