Chr:
Chr7
Start:
3130577
End:
3132211
Strand:
+
Ref_name:
LOC107281512
Sequence
(XR_003243284.1):
AUAGCUGAUGCAAGUGCAACACAUGGAAGUGCAAAGAGAACACUGAAACUAAUUCAGAACACCAAGCCACCUACACUUCUCAUGGCUAAUAAUGAUGAUGAUGCCAAGAACACAAACUCAGAGAAAUCAACCAAACCAAGGUAAGCUGCUGCUGAAUCCAAGGCAGGAAGAGAGGAGAGGCAGCAGCUGGAGCUGGCCAAUGAGAGGAAGCUUUCGUGACACAAAGAAAGCCCUUGUGCCACUCUGCGCAGCAUUCAACACGAAACACUGUUCAUGAUGUACCAUUGCACAACGGCUGCCCCUAUAAAACAUCACCAGAGCAUUGAUCAUAUGGACCCUUUCAGAUAUAGUCAAGCUGUGAACUGGAGCAGCAACCAUUGGGAACAGAACUCAGCAAAGCAAGCAAAGAAAACAUGAACCUAGGAAAAAAAAAACAAUGAGGACAGGCAAAGGCAGCUGUGUAACUGUCCCUAGAUCUCUUCAACCUUUAUGCUGUGGUAGCCAGUGUAUAGUGUACUAACUGACUUCCACAACUGCUACUGGUUUCUUGGUUAAAUUGCUCUUGUAGAAGCAACAGUUUUUUUCAGUUUGAGUGAUGUUUUUUUUUGUCUAUGCACAGAAAAGAAUCAAAGGAUGCCAAUGACUGUCUAAUCAAACUUUUUUUUCCUCUGCCAUGUACUGAAGUAGGAGUACUAUAUUACCUGGUAUACAACCGUUUAUAGCAGCCUACUAGAUUUCCAAACAAUGCUAGUUCUAACAUCCGUGGUUAAUUAAAGAUAUUUGUGGAAUUGAAUCUUUGUACAGACAAUGCAGUUUAAGGCUAUCCCCAAAUGCAGAUGGCAAAUGAACAUUUGAGGGAACAUGAUUUGAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.67%
ME_num:
MEP:
44.92%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.69
Avg Expression:
1.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.24893323050353 | 0.00162670016362838 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.06309065288917 | 1.91136154109816e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.20290523984279 | 5.19556704005318e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.57333759927602 | 0.0232431138301105 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.94910592683331 | 0.000312767930333312 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.47355398520569 | 0.00068773569218557 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.07430464145314 | 0.000288373584829125 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.43125823473232 | 1.9821999747677e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.49043177839777 | 2.03615287466426e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.78314413060578 | 9.51495354271653e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.96878168303127 | 4.05742443211327e-08 |