Chr:
Chr7
Start:
28460726
End:
28462450
Strand:
-
Ref_name:
LOC107281507
Sequence
(XR_003243499.1):
CCCAAUUGAGUGGACGGAUUUACCCCUGCACACAUACAGAUCAGACGGAGAGGAUCAAUUCAGACGCCGCCGUAGAGAGGAGCCCAGCGCCGCCGCUUCCACGCCGAGCAGCCUCCGCCGUCCGCCGACGCCUUCGUGGCUUGGAAAUCCUCCAUGGCAGCCUCUGCCGUUGCCGCGGCCAUCUUCCUCCGCCUCCGCCAAGUCCGCCGCAUAUGGCCGCCCUCGCAUCUCGAGUCGCUCAGUCGCCCCGCCCCAUCCUCAUCCUCUCGGGCCGGAGGCCCCCCGCCGGCCGGCCACCGCCCGCCGCUACCACCGGCUGAGUGACUGACCGGGACUGAUUUUAGGCAUUUAGCCAUUCGCCGACGACAGGCUAUUCAUAUUGCUGGGACCAAGGGGAAAUGUUCAACUGCUGCAUUCCUGUCCAAUAUCAUGAGGGAGCAAGGCUAUAGUGUAGGAUGCUAUACUAGGUACUGCACUGCAUUUCUGUGAUUUUUAAUCAUUUUUUCUAGUUGGAAAACGUAUUCAGAAUUUUGUAACACAAAGGACACAUAUAUGCUUCUUUUCACGAAAAUAUUGUUAAGUGUAGGGACUAUAAUCUAUUAGCGUGUUGUUCUCUGUCAUCCUGAGUUAUGUUUCAAACAUUUAAUCACCGUAUCUAGAUUGUAGAAUUACUGUUAAGUCUUUCAAGAAAAUAUUGUUAAGUGUGUUCUGUUGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
11.38%
ME_num:
MEP:
81.1%
HE_num:
HEP:
7.32%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.86
Avg Expression:
13.11
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.75459510222488 | 0.0385691543472279 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.17428583246603 | 0.00342137006925548 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.55852691080158 | 0.00293171827431074 |
| 4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.09599725997682 | 0.0423839651943669 |
| 5 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.21476107145158 | 0.000128839304344176 |